Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Clp1Q99LI9 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
Clp1Q99LI9 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
Clp1Q99LI9 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Clp1Q99LI9 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Clp1Q99LI9 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Clp1Q99LI9 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Clp1Q99LI9 Gm8839-201ENSMUST00000121279 1645 ntBASIC16.59■□□□□ 0.25
Clp1Q99LI9 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
Clp1Q99LI9 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Clp1Q99LI9 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Clp1Q99LI9 Gm29361-201ENSMUST00000183323 2000 ntBASIC16.58■□□□□ 0.25
Clp1Q99LI9 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC16.58■□□□□ 0.24
Clp1Q99LI9 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Clp1Q99LI9 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC16.58■□□□□ 0.24
Clp1Q99LI9 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Clp1Q99LI9 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Clp1Q99LI9 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Clp1Q99LI9 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Clp1Q99LI9 AC131187.1-201ENSMUST00000224567 809 ntBASIC16.58■□□□□ 0.24
Clp1Q99LI9 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
Clp1Q99LI9 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Clp1Q99LI9 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
Clp1Q99LI9 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
Clp1Q99LI9 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
Clp1Q99LI9 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Clp1Q99LI9 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
Clp1Q99LI9 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
Clp1Q99LI9 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Clp1Q99LI9 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Clp1Q99LI9 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
Clp1Q99LI9 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Clp1Q99LI9 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Clp1Q99LI9 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Clp1Q99LI9 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Clp1Q99LI9 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
Clp1Q99LI9 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Clp1Q99LI9 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Clp1Q99LI9 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Clp1Q99LI9 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
Clp1Q99LI9 Wnt10b-206ENSMUST00000228546 2709 ntBASIC16.58■□□□□ 0.24
Clp1Q99LI9 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Clp1Q99LI9 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Clp1Q99LI9 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
Clp1Q99LI9 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Clp1Q99LI9 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Clp1Q99LI9 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Clp1Q99LI9 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Clp1Q99LI9 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Clp1Q99LI9 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC16.57■□□□□ 0.24
Clp1Q99LI9 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
Clp1Q99LI9 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
Clp1Q99LI9 Gm43125-201ENSMUST00000201724 730 ntBASIC16.57■□□□□ 0.24
Clp1Q99LI9 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
Clp1Q99LI9 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Clp1Q99LI9 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Clp1Q99LI9 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Clp1Q99LI9 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
Clp1Q99LI9 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC16.56■□□□□ 0.24
Clp1Q99LI9 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Clp1Q99LI9 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC16.56■□□□□ 0.24
Clp1Q99LI9 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
Clp1Q99LI9 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Clp1Q99LI9 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Clp1Q99LI9 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
Clp1Q99LI9 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC16.56■□□□□ 0.24
Clp1Q99LI9 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC16.56■□□□□ 0.24
Clp1Q99LI9 Wdyhv1-206ENSMUST00000227142 786 ntBASIC16.56■□□□□ 0.24
Clp1Q99LI9 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC16.56■□□□□ 0.24
Clp1Q99LI9 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Clp1Q99LI9 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Clp1Q99LI9 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Clp1Q99LI9 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
Clp1Q99LI9 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
Clp1Q99LI9 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Clp1Q99LI9 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Clp1Q99LI9 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Clp1Q99LI9 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Clp1Q99LI9 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Clp1Q99LI9 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Clp1Q99LI9 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Clp1Q99LI9 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Clp1Q99LI9 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC16.55■□□□□ 0.24
Clp1Q99LI9 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Clp1Q99LI9 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Clp1Q99LI9 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
Clp1Q99LI9 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Clp1Q99LI9 Mir449b-201ENSMUST00000104833 80 ntBASIC16.55■□□□□ 0.24
Clp1Q99LI9 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC16.55■□□□□ 0.24
Clp1Q99LI9 Gm12008-201ENSMUST00000117791 755 ntBASIC16.55■□□□□ 0.24
Clp1Q99LI9 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC16.55■□□□□ 0.24
Clp1Q99LI9 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC16.55■□□□□ 0.24
Clp1Q99LI9 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC16.55■□□□□ 0.24
Clp1Q99LI9 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Clp1Q99LI9 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Clp1Q99LI9 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
Clp1Q99LI9 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
Clp1Q99LI9 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Clp1Q99LI9 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
Clp1Q99LI9 Haglr-201ENSMUST00000100000 2085 ntBASIC16.55■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 33.6 ms