Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Ccdc9Q8VC31 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ccdc9Q8VC31 Zfp651-201ENSMUST00000093772 6353 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Ccdc9Q8VC31 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ccdc9Q8VC31 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Ccdc9Q8VC31 Plod2-201ENSMUST00000070522 3649 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ccdc9Q8VC31 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Ccdc9Q8VC31 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
Ccdc9Q8VC31 Tmem184c-201ENSMUST00000034030 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ccdc9Q8VC31 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ccdc9Q8VC31 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Ccdc9Q8VC31 AC153366.2-201ENSMUST00000219461 1984 ntBASIC19.06■□□□□ 0.64
Ccdc9Q8VC31 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ccdc9Q8VC31 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ccdc9Q8VC31 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Ccdc9Q8VC31 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ccdc9Q8VC31 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ccdc9Q8VC31 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ccdc9Q8VC31 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
Ccdc9Q8VC31 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ccdc9Q8VC31 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ccdc9Q8VC31 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ccdc9Q8VC31 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ccdc9Q8VC31 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ccdc9Q8VC31 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
Ccdc9Q8VC31 Pard6b-201ENSMUST00000052125 3399 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ccdc9Q8VC31 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Ccdc9Q8VC31 Adam15-201ENSMUST00000029676 2975 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ccdc9Q8VC31 Eaf1-201ENSMUST00000022446 4918 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ccdc9Q8VC31 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
Ccdc9Q8VC31 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Ccdc9Q8VC31 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ccdc9Q8VC31 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC19.05■□□□□ 0.64
Ccdc9Q8VC31 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ccdc9Q8VC31 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC19.05■□□□□ 0.64
Ccdc9Q8VC31 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ccdc9Q8VC31 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
Ccdc9Q8VC31 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
Ccdc9Q8VC31 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ccdc9Q8VC31 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ccdc9Q8VC31 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC19.05■□□□□ 0.64
Ccdc9Q8VC31 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ccdc9Q8VC31 Agap1-201ENSMUST00000027521 11921 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ccdc9Q8VC31 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC19.05■□□□□ 0.64
Ccdc9Q8VC31 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Ccdc9Q8VC31 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ccdc9Q8VC31 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ccdc9Q8VC31 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ccdc9Q8VC31 Apol8-202ENSMUST00000089450 2498 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
Ccdc9Q8VC31 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Ccdc9Q8VC31 Gm9947-201ENSMUST00000067599 2920 ntBASIC19.04■□□□□ 0.64
Ccdc9Q8VC31 Gm26852-201ENSMUST00000180691 5751 ntTSL 5 BASIC19.04■□□□□ 0.64
Ccdc9Q8VC31 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ccdc9Q8VC31 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ccdc9Q8VC31 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC19.04■□□□□ 0.64
Ccdc9Q8VC31 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ccdc9Q8VC31 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ccdc9Q8VC31 Slc35b2-207ENSMUST00000226086 850 ntBASIC19.04■□□□□ 0.64
Ccdc9Q8VC31 Lgals8-202ENSMUST00000099821 2792 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ccdc9Q8VC31 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC19.04■□□□□ 0.64
Ccdc9Q8VC31 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Ccdc9Q8VC31 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ccdc9Q8VC31 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Ccdc9Q8VC31 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ccdc9Q8VC31 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ccdc9Q8VC31 Gm13148-201ENSMUST00000118892 745 ntBASIC19.03■□□□□ 0.64
Ccdc9Q8VC31 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ccdc9Q8VC31 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC19.03■□□□□ 0.64
Ccdc9Q8VC31 Ntrk2-208ENSMUST00000225583 2719 ntBASIC19.03■□□□□ 0.64
Ccdc9Q8VC31 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ccdc9Q8VC31 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ccdc9Q8VC31 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ccdc9Q8VC31 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC19.02■□□□□ 0.64
Ccdc9Q8VC31 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Ccdc9Q8VC31 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC19.02■□□□□ 0.64
Ccdc9Q8VC31 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Ccdc9Q8VC31 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Ccdc9Q8VC31 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
Ccdc9Q8VC31 Tcf12-201ENSMUST00000034755 4621 ntAPPRIS ALT1 TSL 5 BASIC19.02■□□□□ 0.64
Ccdc9Q8VC31 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC19.02■□□□□ 0.64
Ccdc9Q8VC31 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Ccdc9Q8VC31 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Ccdc9Q8VC31 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
Ccdc9Q8VC31 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
Ccdc9Q8VC31 Klhdc3-201ENSMUST00000071841 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Ccdc9Q8VC31 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Ccdc9Q8VC31 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Ccdc9Q8VC31 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Ccdc9Q8VC31 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Ccdc9Q8VC31 Gm43796-201ENSMUST00000202853 2012 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
Ccdc9Q8VC31 Etv6-202ENSMUST00000111963 5707 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Ccdc9Q8VC31 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ccdc9Q8VC31 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Ccdc9Q8VC31 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ccdc9Q8VC31 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ccdc9Q8VC31 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ccdc9Q8VC31 Kif7-204ENSMUST00000184137 4093 ntAPPRIS P3 TSL 5 BASIC19.01■□□□□ 0.63
Ccdc9Q8VC31 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Ccdc9Q8VC31 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
Ccdc9Q8VC31 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 41.7 ms