Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim56Q80VI1 Gm3928-201ENSMUST00000121141 1307 ntBASIC18.59■□□□□ 0.57
Trim56Q80VI1 Dancr-204ENSMUST00000132389 2347 ntBASIC18.59■□□□□ 0.57
Trim56Q80VI1 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim56Q80VI1 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC18.59■□□□□ 0.57
Trim56Q80VI1 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim56Q80VI1 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim56Q80VI1 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim56Q80VI1 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim56Q80VI1 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim56Q80VI1 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim56Q80VI1 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim56Q80VI1 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim56Q80VI1 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Trim56Q80VI1 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim56Q80VI1 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Trim56Q80VI1 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trim56Q80VI1 Gm37500-201ENSMUST00000192059 1443 ntBASIC18.58■□□□□ 0.57
Trim56Q80VI1 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trim56Q80VI1 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trim56Q80VI1 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trim56Q80VI1 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trim56Q80VI1 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Trim56Q80VI1 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
Trim56Q80VI1 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trim56Q80VI1 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
Trim56Q80VI1 Gm5682-201ENSMUST00000173402 505 ntBASIC18.58■□□□□ 0.56
Trim56Q80VI1 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trim56Q80VI1 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC18.58■□□□□ 0.56
Trim56Q80VI1 Gm2651-201ENSMUST00000203560 838 ntBASIC18.58■□□□□ 0.56
Trim56Q80VI1 Gm18195-201ENSMUST00000207604 706 ntBASIC18.58■□□□□ 0.56
Trim56Q80VI1 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Trim56Q80VI1 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trim56Q80VI1 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trim56Q80VI1 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trim56Q80VI1 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trim56Q80VI1 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trim56Q80VI1 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trim56Q80VI1 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
Trim56Q80VI1 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
Trim56Q80VI1 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim56Q80VI1 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim56Q80VI1 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim56Q80VI1 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim56Q80VI1 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
Trim56Q80VI1 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
Trim56Q80VI1 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
Trim56Q80VI1 Gm6550-201ENSMUST00000187574 993 ntBASIC18.57■□□□□ 0.56
Trim56Q80VI1 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC18.57■□□□□ 0.56
Trim56Q80VI1 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC18.57■□□□□ 0.56
Trim56Q80VI1 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim56Q80VI1 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim56Q80VI1 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim56Q80VI1 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Trim56Q80VI1 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim56Q80VI1 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Trim56Q80VI1 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim56Q80VI1 Gm7669-201ENSMUST00000210184 1603 ntBASIC18.56■□□□□ 0.56
Trim56Q80VI1 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim56Q80VI1 Shroom3-211ENSMUST00000225438 5742 ntBASIC18.56■□□□□ 0.56
Trim56Q80VI1 Prob1-201ENSMUST00000097619 3021 ntBASIC18.56■□□□□ 0.56
Trim56Q80VI1 Prkcz2-201ENSMUST00000206136 1756 ntBASIC18.56■□□□□ 0.56
Trim56Q80VI1 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trim56Q80VI1 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trim56Q80VI1 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim56Q80VI1 Gm15358-201ENSMUST00000119249 520 ntBASIC18.56■□□□□ 0.56
Trim56Q80VI1 Gm12350-201ENSMUST00000121208 462 ntBASIC18.56■□□□□ 0.56
Trim56Q80VI1 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC18.56■□□□□ 0.56
Trim56Q80VI1 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim56Q80VI1 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim56Q80VI1 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim56Q80VI1 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC18.56■□□□□ 0.56
Trim56Q80VI1 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim56Q80VI1 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim56Q80VI1 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trim56Q80VI1 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim56Q80VI1 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC18.56■□□□□ 0.56
Trim56Q80VI1 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC18.56■□□□□ 0.56
Trim56Q80VI1 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim56Q80VI1 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim56Q80VI1 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trim56Q80VI1 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim56Q80VI1 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim56Q80VI1 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim56Q80VI1 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim56Q80VI1 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim56Q80VI1 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC18.55■□□□□ 0.56
Trim56Q80VI1 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim56Q80VI1 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim56Q80VI1 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim56Q80VI1 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim56Q80VI1 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC18.55■□□□□ 0.56
Trim56Q80VI1 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC18.55■□□□□ 0.56
Trim56Q80VI1 Gm44771-201ENSMUST00000206975 626 ntBASIC18.55■□□□□ 0.56
Trim56Q80VI1 Gm19164-201ENSMUST00000210667 640 ntBASIC18.55■□□□□ 0.56
Trim56Q80VI1 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC18.55■□□□□ 0.56
Trim56Q80VI1 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim56Q80VI1 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim56Q80VI1 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim56Q80VI1 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC18.55■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 23.4 ms