Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC17.98■□□□□ 0.47
Usp28Q5I043 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Usp28Q5I043 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usp28Q5I043 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usp28Q5I043 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usp28Q5I043 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usp28Q5I043 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Usp28Q5I043 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
Usp28Q5I043 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usp28Q5I043 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Usp28Q5I043 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
Usp28Q5I043 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Usp28Q5I043 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usp28Q5I043 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usp28Q5I043 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
Usp28Q5I043 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usp28Q5I043 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Usp28Q5I043 Gm5421-201ENSMUST00000181698 2354 ntBASIC17.98■□□□□ 0.47
Usp28Q5I043 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usp28Q5I043 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usp28Q5I043 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usp28Q5I043 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC17.98■□□□□ 0.47
Usp28Q5I043 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Usp28Q5I043 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC17.97■□□□□ 0.47
Usp28Q5I043 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Usp28Q5I043 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Usp28Q5I043 Gm11950-201ENSMUST00000121615 838 ntBASIC17.97■□□□□ 0.47
Usp28Q5I043 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Usp28Q5I043 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC17.97■□□□□ 0.47
Usp28Q5I043 Gm7507-201ENSMUST00000183053 1008 ntBASIC17.97■□□□□ 0.47
Usp28Q5I043 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Usp28Q5I043 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Usp28Q5I043 Tfap2a-203ENSMUST00000223869 2037 ntBASIC17.97■□□□□ 0.47
Usp28Q5I043 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Usp28Q5I043 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
Usp28Q5I043 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC17.97■□□□□ 0.47
Usp28Q5I043 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Usp28Q5I043 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Usp28Q5I043 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Usp28Q5I043 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
Usp28Q5I043 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Usp28Q5I043 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Usp28Q5I043 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Usp28Q5I043 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Usp28Q5I043 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Usp28Q5I043 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Usp28Q5I043 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
Usp28Q5I043 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Usp28Q5I043 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Usp28Q5I043 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Usp28Q5I043 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
Usp28Q5I043 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Usp28Q5I043 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Usp28Q5I043 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC17.96■□□□□ 0.47
Usp28Q5I043 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Usp28Q5I043 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC17.96■□□□□ 0.47
Usp28Q5I043 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Usp28Q5I043 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Usp28Q5I043 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Usp28Q5I043 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Usp28Q5I043 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Usp28Q5I043 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Usp28Q5I043 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
Usp28Q5I043 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC17.96■□□□□ 0.47
Usp28Q5I043 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Usp28Q5I043 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Usp28Q5I043 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC17.95■□□□□ 0.46
Usp28Q5I043 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
Usp28Q5I043 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Usp28Q5I043 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
Usp28Q5I043 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Usp28Q5I043 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Usp28Q5I043 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Usp28Q5I043 Gm15794-201ENSMUST00000120182 631 ntBASIC17.95■□□□□ 0.46
Usp28Q5I043 Gm17808-201ENSMUST00000200859 894 ntBASIC17.95■□□□□ 0.46
Usp28Q5I043 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Usp28Q5I043 AC130713.1-201ENSMUST00000228853 1096 ntBASIC17.95■□□□□ 0.46
Usp28Q5I043 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Usp28Q5I043 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Usp28Q5I043 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Usp28Q5I043 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Usp28Q5I043 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Usp28Q5I043 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Usp28Q5I043 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Usp28Q5I043 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Usp28Q5I043 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
Usp28Q5I043 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Usp28Q5I043 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Usp28Q5I043 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Usp28Q5I043 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Usp28Q5I043 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Usp28Q5I043 Gm8349-201ENSMUST00000182720 1003 ntBASIC17.94■□□□□ 0.46
Usp28Q5I043 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
Usp28Q5I043 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
Usp28Q5I043 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Usp28Q5I043 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Usp28Q5I043 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Usp28Q5I043 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
Usp28Q5I043 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Usp28Q5I043 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms