Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Gm10576-201ENSMUST00000191927 825 ntBASIC16.6■□□□□ 0.25
Upf3aQ3ULJ3 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC16.6■□□□□ 0.25
Upf3aQ3ULJ3 AC158538.2-201ENSMUST00000225455 906 ntBASIC16.6■□□□□ 0.25
Upf3aQ3ULJ3 AC124549.3-201ENSMUST00000225541 367 ntBASIC16.6■□□□□ 0.25
Upf3aQ3ULJ3 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Upf3aQ3ULJ3 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC16.6■□□□□ 0.25
Upf3aQ3ULJ3 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Upf3aQ3ULJ3 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Upf3aQ3ULJ3 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Upf3aQ3ULJ3 Gm6598-201ENSMUST00000202719 2615 ntBASIC16.6■□□□□ 0.25
Upf3aQ3ULJ3 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Upf3aQ3ULJ3 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Upf3aQ3ULJ3 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC16.6■□□□□ 0.25
Upf3aQ3ULJ3 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
Upf3aQ3ULJ3 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC16.59■□□□□ 0.25
Upf3aQ3ULJ3 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Upf3aQ3ULJ3 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
Upf3aQ3ULJ3 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Upf3aQ3ULJ3 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Upf3aQ3ULJ3 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
Upf3aQ3ULJ3 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Upf3aQ3ULJ3 Olfr615-201ENSMUST00000098198 942 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
Upf3aQ3ULJ3 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Upf3aQ3ULJ3 Gm13294-201ENSMUST00000121757 1330 ntBASIC16.59■□□□□ 0.25
Upf3aQ3ULJ3 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Upf3aQ3ULJ3 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
Upf3aQ3ULJ3 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Upf3aQ3ULJ3 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
Upf3aQ3ULJ3 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Upf3aQ3ULJ3 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Upf3aQ3ULJ3 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
Upf3aQ3ULJ3 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Upf3aQ3ULJ3 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Upf3aQ3ULJ3 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Upf3aQ3ULJ3 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC16.58■□□□□ 0.25
Upf3aQ3ULJ3 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
Upf3aQ3ULJ3 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Upf3aQ3ULJ3 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Upf3aQ3ULJ3 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Upf3aQ3ULJ3 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Upf3aQ3ULJ3 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
Upf3aQ3ULJ3 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC16.58■□□□□ 0.24
Upf3aQ3ULJ3 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC16.58■□□□□ 0.24
Upf3aQ3ULJ3 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC16.58■□□□□ 0.24
Upf3aQ3ULJ3 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Upf3aQ3ULJ3 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC16.58■□□□□ 0.24
Upf3aQ3ULJ3 Gm8396-201ENSMUST00000057361 823 ntBASIC16.58■□□□□ 0.24
Upf3aQ3ULJ3 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Upf3aQ3ULJ3 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Upf3aQ3ULJ3 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
Upf3aQ3ULJ3 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Upf3aQ3ULJ3 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Upf3aQ3ULJ3 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Upf3aQ3ULJ3 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Upf3aQ3ULJ3 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Upf3aQ3ULJ3 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
Upf3aQ3ULJ3 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Upf3aQ3ULJ3 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Upf3aQ3ULJ3 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
Upf3aQ3ULJ3 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Upf3aQ3ULJ3 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Upf3aQ3ULJ3 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
Upf3aQ3ULJ3 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Upf3aQ3ULJ3 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Upf3aQ3ULJ3 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Upf3aQ3ULJ3 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC16.57■□□□□ 0.24
Upf3aQ3ULJ3 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Upf3aQ3ULJ3 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Upf3aQ3ULJ3 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Upf3aQ3ULJ3 Tmco1-204ENSMUST00000195015 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Upf3aQ3ULJ3 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Upf3aQ3ULJ3 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Upf3aQ3ULJ3 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC16.57■□□□□ 0.24
Upf3aQ3ULJ3 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Upf3aQ3ULJ3 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
Upf3aQ3ULJ3 Gm14701-201ENSMUST00000117156 348 ntBASIC16.57■□□□□ 0.24
Upf3aQ3ULJ3 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC16.57■□□□□ 0.24
Upf3aQ3ULJ3 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC16.57■□□□□ 0.24
Upf3aQ3ULJ3 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC16.57■□□□□ 0.24
Upf3aQ3ULJ3 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Upf3aQ3ULJ3 Mt3-201ENSMUST00000034211 536 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Upf3aQ3ULJ3 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Upf3aQ3ULJ3 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Upf3aQ3ULJ3 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC16.57■□□□□ 0.24
Upf3aQ3ULJ3 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC16.57■□□□□ 0.24
Upf3aQ3ULJ3 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
Upf3aQ3ULJ3 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Upf3aQ3ULJ3 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC16.56■□□□□ 0.24
Upf3aQ3ULJ3 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Upf3aQ3ULJ3 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Upf3aQ3ULJ3 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Upf3aQ3ULJ3 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Upf3aQ3ULJ3 Iqsec1-202ENSMUST00000101153 8036 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
Upf3aQ3ULJ3 Mir7036b-201ENSMUST00000184791 63 ntBASIC16.56■□□□□ 0.24
Upf3aQ3ULJ3 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
Upf3aQ3ULJ3 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Upf3aQ3ULJ3 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC16.56■□□□□ 0.24
Upf3aQ3ULJ3 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC16.56■□□□□ 0.24
Upf3aQ3ULJ3 Gm5898-201ENSMUST00000121016 2071 ntBASIC16.56■□□□□ 0.24
Upf3aQ3ULJ3 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 30.9 ms