Protein–RNA interactions for Protein: P70390

Shox2, Short stature homeobox protein 2, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shox2P70390 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Shox2P70390 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Shox2P70390 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Shox2P70390 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Shox2P70390 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Shox2P70390 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Shox2P70390 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Shox2P70390 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Shox2P70390 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Shox2P70390 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC15.69■□□□□ 0.1
Shox2P70390 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC15.69■□□□□ 0.1
Shox2P70390 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC15.69■□□□□ 0.1
Shox2P70390 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Shox2P70390 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Shox2P70390 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC15.69■□□□□ 0.1
Shox2P70390 Barhl2-201ENSMUST00000086795 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Shox2P70390 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Shox2P70390 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Shox2P70390 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Shox2P70390 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
Shox2P70390 Sybu-209ENSMUST00000228639 4113 ntBASIC15.69■□□□□ 0.1
Shox2P70390 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Shox2P70390 Gm8784-201ENSMUST00000222096 1435 ntBASIC15.68■□□□□ 0.1
Shox2P70390 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Shox2P70390 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC15.68■□□□□ 0.1
Shox2P70390 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC15.68■□□□□ 0.1
Shox2P70390 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Shox2P70390 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Shox2P70390 Mocos-201ENSMUST00000068006 2884 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Shox2P70390 Gm21451-201ENSMUST00000111062 2775 ntBASIC15.68■□□□□ 0.1
Shox2P70390 Tmem39a-214ENSMUST00000171687 2667 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Shox2P70390 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
Shox2P70390 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Shox2P70390 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Shox2P70390 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Shox2P70390 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Shox2P70390 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Shox2P70390 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC15.68■□□□□ 0.1
Shox2P70390 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Shox2P70390 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Shox2P70390 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Shox2P70390 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Shox2P70390 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Shox2P70390 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Shox2P70390 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Shox2P70390 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Shox2P70390 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Shox2P70390 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Shox2P70390 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Shox2P70390 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Shox2P70390 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Shox2P70390 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Shox2P70390 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC15.67■□□□□ 0.1
Shox2P70390 Gm38027-201ENSMUST00000192315 235 ntBASIC15.67■□□□□ 0.1
Shox2P70390 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Shox2P70390 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Shox2P70390 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC15.67■□□□□ 0.1
Shox2P70390 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Shox2P70390 Eef2kmt-201ENSMUST00000064635 2170 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Shox2P70390 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Shox2P70390 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Shox2P70390 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
Shox2P70390 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Shox2P70390 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Shox2P70390 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC15.67■□□□□ 0.1
Shox2P70390 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Shox2P70390 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Shox2P70390 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
Shox2P70390 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Shox2P70390 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Shox2P70390 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Shox2P70390 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Shox2P70390 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC15.66■□□□□ 0.1
Shox2P70390 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC15.66■□□□□ 0.1
Shox2P70390 Anks1b-231ENSMUST00000183136 2786 ntTSL 5 BASIC15.66■□□□□ 0.1
Shox2P70390 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Shox2P70390 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC15.66■□□□□ 0.1
Shox2P70390 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Shox2P70390 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Shox2P70390 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Shox2P70390 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Shox2P70390 Gm37019-201ENSMUST00000192133 2134 ntBASIC15.66■□□□□ 0.1
Shox2P70390 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC15.66■□□□□ 0.1
Shox2P70390 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC15.66■□□□□ 0.1
Shox2P70390 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Shox2P70390 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Shox2P70390 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Shox2P70390 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Shox2P70390 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Shox2P70390 Gm43859-201ENSMUST00000200075 1412 ntBASIC15.66■□□□□ 0.1
Shox2P70390 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Shox2P70390 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Shox2P70390 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Shox2P70390 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Shox2P70390 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Shox2P70390 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Shox2P70390 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Shox2P70390 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Shox2P70390 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Shox2P70390 Pex12-202ENSMUST00000108146 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 53.1 ms