Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC20.89■□□□□ 0.93
Col18a1P39061 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Col18a1P39061 Nudt17-201ENSMUST00000029742 1039 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Col18a1P39061 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Col18a1P39061 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC20.89■□□□□ 0.93
Col18a1P39061 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
Col18a1P39061 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Col18a1P39061 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col18a1P39061 Gm14042-201ENSMUST00000120139 833 ntBASIC20.88■□□□□ 0.93
Col18a1P39061 Gm833-201ENSMUST00000143133 884 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Col18a1P39061 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col18a1P39061 Pde7b-206ENSMUST00000170265 1380 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
Col18a1P39061 Gm8096-201ENSMUST00000209921 1591 ntBASIC20.88■□□□□ 0.93
Col18a1P39061 Hsd17b14-205ENSMUST00000210300 797 ntTSL 5 BASIC20.88■□□□□ 0.93
Col18a1P39061 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col18a1P39061 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col18a1P39061 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col18a1P39061 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col18a1P39061 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
Col18a1P39061 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col18a1P39061 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col18a1P39061 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col18a1P39061 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col18a1P39061 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
Col18a1P39061 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC20.87■□□□□ 0.93
Col18a1P39061 Gm23984-201ENSMUST00000157139 203 ntBASIC20.87■□□□□ 0.93
Col18a1P39061 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col18a1P39061 Gm6745-201ENSMUST00000199216 526 ntBASIC20.87■□□□□ 0.93
Col18a1P39061 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
Col18a1P39061 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col18a1P39061 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Col18a1P39061 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col18a1P39061 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col18a1P39061 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
Col18a1P39061 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC20.87■□□□□ 0.93
Col18a1P39061 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Col18a1P39061 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC20.87■□□□□ 0.93
Col18a1P39061 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC20.87■□□□□ 0.93
Col18a1P39061 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC20.87■□□□□ 0.93
Col18a1P39061 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC20.87■□□□□ 0.93
Col18a1P39061 Tnfrsf12a-202ENSMUST00000167059 858 ntTSL 2 BASIC20.87■□□□□ 0.93
Col18a1P39061 Tnfrsf12a-201ENSMUST00000024698 963 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col18a1P39061 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC20.87■□□□□ 0.93
Col18a1P39061 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col18a1P39061 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Col18a1P39061 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col18a1P39061 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Col18a1P39061 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Col18a1P39061 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Col18a1P39061 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Col18a1P39061 Tnnt1-208ENSMUST00000166161 750 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
Col18a1P39061 Gm43703-201ENSMUST00000200523 763 ntBASIC20.86■□□□□ 0.93
Col18a1P39061 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Col18a1P39061 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col18a1P39061 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC20.85■□□□□ 0.93
Col18a1P39061 Gm36858-201ENSMUST00000194501 2391 ntBASIC20.85■□□□□ 0.93
Col18a1P39061 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Col18a1P39061 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC20.85■□□□□ 0.93
Col18a1P39061 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col18a1P39061 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC20.85■□□□□ 0.93
Col18a1P39061 Gm18062-201ENSMUST00000208020 547 ntBASIC20.85■□□□□ 0.93
Col18a1P39061 Gm18055-201ENSMUST00000208254 547 ntBASIC20.85■□□□□ 0.93
Col18a1P39061 Fthl17c-201ENSMUST00000075792 850 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
Col18a1P39061 Gm7901-201ENSMUST00000120430 1597 ntBASIC20.85■□□□□ 0.93
Col18a1P39061 Ldha-202ENSMUST00000048209 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col18a1P39061 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col18a1P39061 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
Col18a1P39061 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC20.85■□□□□ 0.93
Col18a1P39061 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC20.85■□□□□ 0.93
Col18a1P39061 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Col18a1P39061 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC20.85■□□□□ 0.93
Col18a1P39061 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col18a1P39061 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col18a1P39061 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col18a1P39061 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Col18a1P39061 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Col18a1P39061 Calml4-201ENSMUST00000034777 864 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col18a1P39061 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Col18a1P39061 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC20.84■□□□□ 0.93
Col18a1P39061 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Col18a1P39061 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Col18a1P39061 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Col18a1P39061 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
Col18a1P39061 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Col18a1P39061 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Col18a1P39061 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Col18a1P39061 Snrnp27-202ENSMUST00000113683 1005 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Col18a1P39061 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Col18a1P39061 Mrps24-205ENSMUST00000154330 995 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Col18a1P39061 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Col18a1P39061 Sh3bgrl3-201ENSMUST00000030651 743 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Col18a1P39061 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Col18a1P39061 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
Col18a1P39061 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Col18a1P39061 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Col18a1P39061 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC20.83■□□□□ 0.93
Col18a1P39061 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Col18a1P39061 Gm42939-201ENSMUST00000197514 2205 ntBASIC20.83■□□□□ 0.93
Col18a1P39061 Mkl2-203ENSMUST00000115809 667 ntTSL 2 BASIC20.83■□□□□ 0.93
Col18a1P39061 1700047K16Rik-201ENSMUST00000145068 886 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 33.4 ms