Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col2a1P28481 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col2a1P28481 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col2a1P28481 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC17.8■□□□□ 0.44
Col2a1P28481 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Col2a1P28481 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Col2a1P28481 Gm6226-201ENSMUST00000117765 1146 ntBASIC17.8■□□□□ 0.44
Col2a1P28481 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC17.8■□□□□ 0.44
Col2a1P28481 AC155252.2-201ENSMUST00000226946 680 ntBASIC17.8■□□□□ 0.44
Col2a1P28481 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col2a1P28481 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Col2a1P28481 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col2a1P28481 Serpinf1-201ENSMUST00000000769 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col2a1P28481 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Col2a1P28481 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col2a1P28481 Pycrl-201ENSMUST00000053918 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col2a1P28481 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Col2a1P28481 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col2a1P28481 AC130669.1-201ENSMUST00000228537 1672 ntBASIC17.79■□□□□ 0.44
Col2a1P28481 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col2a1P28481 Gm11025-201ENSMUST00000140773 466 ntBASIC17.79■□□□□ 0.44
Col2a1P28481 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC17.79■□□□□ 0.44
Col2a1P28481 Gm20553-201ENSMUST00000204205 844 ntBASIC17.79■□□□□ 0.44
Col2a1P28481 Nrn1-204ENSMUST00000224323 1779 ntBASIC17.79■□□□□ 0.44
Col2a1P28481 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC17.79■□□□□ 0.44
Col2a1P28481 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
Col2a1P28481 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col2a1P28481 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col2a1P28481 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Col2a1P28481 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col2a1P28481 Gm13332-201ENSMUST00000120451 1398 ntBASIC17.79■□□□□ 0.44
Col2a1P28481 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col2a1P28481 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col2a1P28481 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Col2a1P28481 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Col2a1P28481 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col2a1P28481 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col2a1P28481 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col2a1P28481 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC17.78■□□□□ 0.44
Col2a1P28481 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col2a1P28481 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col2a1P28481 Gm11745-201ENSMUST00000121669 448 ntBASIC17.78■□□□□ 0.44
Col2a1P28481 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC17.78■□□□□ 0.44
Col2a1P28481 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
Col2a1P28481 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC17.78■□□□□ 0.44
Col2a1P28481 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Col2a1P28481 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col2a1P28481 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col2a1P28481 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col2a1P28481 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col2a1P28481 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col2a1P28481 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col2a1P28481 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col2a1P28481 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col2a1P28481 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.44
Col2a1P28481 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
Col2a1P28481 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC17.77■□□□□ 0.44
Col2a1P28481 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
Col2a1P28481 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC17.77■□□□□ 0.44
Col2a1P28481 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Col2a1P28481 CT009510.1-201ENSMUST00000227972 270 ntBASIC17.77■□□□□ 0.44
Col2a1P28481 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col2a1P28481 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC17.77■□□□□ 0.44
Col2a1P28481 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col2a1P28481 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col2a1P28481 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col2a1P28481 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Col2a1P28481 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
Col2a1P28481 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col2a1P28481 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
Col2a1P28481 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col2a1P28481 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC17.76■□□□□ 0.43
Col2a1P28481 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Col2a1P28481 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC17.76■□□□□ 0.43
Col2a1P28481 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col2a1P28481 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col2a1P28481 Gm7292-201ENSMUST00000194706 2527 ntBASIC17.76■□□□□ 0.43
Col2a1P28481 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col2a1P28481 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col2a1P28481 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col2a1P28481 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col2a1P28481 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Col2a1P28481 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col2a1P28481 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col2a1P28481 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col2a1P28481 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC17.75■□□□□ 0.43
Col2a1P28481 Gm5628-201ENSMUST00000222318 1049 ntBASIC17.75■□□□□ 0.43
Col2a1P28481 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC17.75■□□□□ 0.43
Col2a1P28481 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Col2a1P28481 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col2a1P28481 Gm19430-201ENSMUST00000193847 2137 ntBASIC17.75■□□□□ 0.43
Col2a1P28481 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Col2a1P28481 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col2a1P28481 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Col2a1P28481 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col2a1P28481 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Col2a1P28481 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col2a1P28481 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col2a1P28481 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC17.75■□□□□ 0.43
Col2a1P28481 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 41.1 ms