Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sdc1P18828 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sdc1P18828 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sdc1P18828 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sdc1P18828 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
Sdc1P18828 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sdc1P18828 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sdc1P18828 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sdc1P18828 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sdc1P18828 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Sdc1P18828 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Sdc1P18828 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC13.02□□□□□ -0.32
Sdc1P18828 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Sdc1P18828 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Sdc1P18828 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Sdc1P18828 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Sdc1P18828 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Sdc1P18828 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Sdc1P18828 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Sdc1P18828 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Sdc1P18828 Wnt10b-206ENSMUST00000228546 2709 ntBASIC13.02□□□□□ -0.32
Sdc1P18828 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sdc1P18828 Bmper-201ENSMUST00000071982 3791 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sdc1P18828 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Sdc1P18828 Gm6211-202ENSMUST00000167849 925 ntBASIC13.02□□□□□ -0.33
Sdc1P18828 Gm21168-201ENSMUST00000199646 1096 ntBASIC13.02□□□□□ -0.33
Sdc1P18828 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sdc1P18828 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
Sdc1P18828 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC13.02□□□□□ -0.33
Sdc1P18828 Dsel-201ENSMUST00000035462 5759 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sdc1P18828 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sdc1P18828 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sdc1P18828 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sdc1P18828 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sdc1P18828 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sdc1P18828 Tmem94-201ENSMUST00000093912 5329 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sdc1P18828 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sdc1P18828 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sdc1P18828 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
Sdc1P18828 2700080J24Rik-201ENSMUST00000205314 1662 ntBASIC13.02□□□□□ -0.33
Sdc1P18828 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Sdc1P18828 AC159649.2-201ENSMUST00000222984 3223 ntBASIC13.01□□□□□ -0.33
Sdc1P18828 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sdc1P18828 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sdc1P18828 Pcsk5-201ENSMUST00000025618 6675 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Sdc1P18828 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sdc1P18828 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sdc1P18828 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC13.01□□□□□ -0.33
Sdc1P18828 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC13.01□□□□□ -0.33
Sdc1P18828 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sdc1P18828 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sdc1P18828 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC13.01□□□□□ -0.33
Sdc1P18828 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Sdc1P18828 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sdc1P18828 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Sdc1P18828 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC13.01□□□□□ -0.33
Sdc1P18828 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC13.01□□□□□ -0.33
Sdc1P18828 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Sdc1P18828 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sdc1P18828 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC13.01□□□□□ -0.33
Sdc1P18828 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC13.01□□□□□ -0.33
Sdc1P18828 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Sdc1P18828 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sdc1P18828 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sdc1P18828 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
Sdc1P18828 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sdc1P18828 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sdc1P18828 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Sdc1P18828 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC13□□□□□ -0.33
Sdc1P18828 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC13□□□□□ -0.33
Sdc1P18828 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Sdc1P18828 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Sdc1P18828 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Sdc1P18828 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Sdc1P18828 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Sdc1P18828 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC13□□□□□ -0.33
Sdc1P18828 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Sdc1P18828 Gm45504-201ENSMUST00000211407 2107 ntBASIC13□□□□□ -0.33
Sdc1P18828 Thnsl2-202ENSMUST00000160918 2077 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Sdc1P18828 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC13□□□□□ -0.33
Sdc1P18828 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Sdc1P18828 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Sdc1P18828 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Sdc1P18828 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Sdc1P18828 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Sdc1P18828 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Sdc1P18828 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC13□□□□□ -0.33
Sdc1P18828 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC13□□□□□ -0.33
Sdc1P18828 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC13□□□□□ -0.33
Sdc1P18828 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC13□□□□□ -0.33
Sdc1P18828 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC13□□□□□ -0.33
Sdc1P18828 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Sdc1P18828 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC13□□□□□ -0.33
Sdc1P18828 Itga3-201ENSMUST00000001548 4861 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Sdc1P18828 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Sdc1P18828 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Sdc1P18828 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC13□□□□□ -0.33
Sdc1P18828 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Sdc1P18828 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Sdc1P18828 Dis3-201ENSMUST00000042471 5150 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 23.3 ms