Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx56Q9D0R4 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx56Q9D0R4 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx56Q9D0R4 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx56Q9D0R4 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx56Q9D0R4 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx56Q9D0R4 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx56Q9D0R4 Wnt10b-206ENSMUST00000228546 2709 ntBASIC16.67■□□□□ 0.26
Ddx56Q9D0R4 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx56Q9D0R4 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Ddx56Q9D0R4 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC16.67■□□□□ 0.26
Ddx56Q9D0R4 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
Ddx56Q9D0R4 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx56Q9D0R4 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx56Q9D0R4 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC16.67■□□□□ 0.26
Ddx56Q9D0R4 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC16.67■□□□□ 0.26
Ddx56Q9D0R4 Gm8349-201ENSMUST00000182720 1003 ntBASIC16.67■□□□□ 0.26
Ddx56Q9D0R4 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx56Q9D0R4 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx56Q9D0R4 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx56Q9D0R4 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx56Q9D0R4 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx56Q9D0R4 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx56Q9D0R4 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx56Q9D0R4 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx56Q9D0R4 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Ddx56Q9D0R4 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx56Q9D0R4 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx56Q9D0R4 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx56Q9D0R4 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx56Q9D0R4 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx56Q9D0R4 Prob1-201ENSMUST00000097619 3021 ntBASIC16.67■□□□□ 0.26
Ddx56Q9D0R4 Ankrd50-202ENSMUST00000120875 4945 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ddx56Q9D0R4 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Ddx56Q9D0R4 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Ddx56Q9D0R4 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ddx56Q9D0R4 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ddx56Q9D0R4 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC16.66■□□□□ 0.26
Ddx56Q9D0R4 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Ddx56Q9D0R4 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ddx56Q9D0R4 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Ddx56Q9D0R4 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC16.66■□□□□ 0.26
Ddx56Q9D0R4 AC127349.1-201ENSMUST00000224590 266 ntBASIC16.66■□□□□ 0.26
Ddx56Q9D0R4 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Ddx56Q9D0R4 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ddx56Q9D0R4 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Ddx56Q9D0R4 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ddx56Q9D0R4 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Ddx56Q9D0R4 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Ddx56Q9D0R4 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ddx56Q9D0R4 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ddx56Q9D0R4 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Ddx56Q9D0R4 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ddx56Q9D0R4 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ddx56Q9D0R4 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ddx56Q9D0R4 AC133083.1-201ENSMUST00000221736 2209 ntBASIC16.65■□□□□ 0.26
Ddx56Q9D0R4 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC16.65■□□□□ 0.26
Ddx56Q9D0R4 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ddx56Q9D0R4 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC16.65■□□□□ 0.26
Ddx56Q9D0R4 Gm27357-201ENSMUST00000183754 135 ntBASIC16.65■□□□□ 0.26
Ddx56Q9D0R4 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ddx56Q9D0R4 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ddx56Q9D0R4 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Ddx56Q9D0R4 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ddx56Q9D0R4 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ddx56Q9D0R4 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ddx56Q9D0R4 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ddx56Q9D0R4 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Ddx56Q9D0R4 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Ddx56Q9D0R4 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ddx56Q9D0R4 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
Ddx56Q9D0R4 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Ddx56Q9D0R4 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Ddx56Q9D0R4 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ddx56Q9D0R4 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ddx56Q9D0R4 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ddx56Q9D0R4 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ddx56Q9D0R4 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Ddx56Q9D0R4 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ddx56Q9D0R4 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Ddx56Q9D0R4 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC16.64■□□□□ 0.25
Ddx56Q9D0R4 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC16.64■□□□□ 0.25
Ddx56Q9D0R4 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC16.64■□□□□ 0.25
Ddx56Q9D0R4 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC16.64■□□□□ 0.25
Ddx56Q9D0R4 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC16.64■□□□□ 0.25
Ddx56Q9D0R4 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ddx56Q9D0R4 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ddx56Q9D0R4 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ddx56Q9D0R4 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ddx56Q9D0R4 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ddx56Q9D0R4 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC16.64■□□□□ 0.25
Ddx56Q9D0R4 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Ddx56Q9D0R4 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ddx56Q9D0R4 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ddx56Q9D0R4 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ddx56Q9D0R4 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ddx56Q9D0R4 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ddx56Q9D0R4 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ddx56Q9D0R4 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC16.64■□□□□ 0.25
Ddx56Q9D0R4 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 44.9 ms