Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Gm15372-201ENSMUST00000120729 834 ntBASIC17.75■□□□□ 0.43
Ushbp1Q8R370 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC17.75■□□□□ 0.43
Ushbp1Q8R370 Gm37935-201ENSMUST00000192012 982 ntBASIC17.75■□□□□ 0.43
Ushbp1Q8R370 Gm2651-201ENSMUST00000203560 838 ntBASIC17.75■□□□□ 0.43
Ushbp1Q8R370 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Ushbp1Q8R370 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ushbp1Q8R370 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Ushbp1Q8R370 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ushbp1Q8R370 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ushbp1Q8R370 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ushbp1Q8R370 AC133083.1-201ENSMUST00000221736 2209 ntBASIC17.75■□□□□ 0.43
Ushbp1Q8R370 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ushbp1Q8R370 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ushbp1Q8R370 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC17.75■□□□□ 0.43
Ushbp1Q8R370 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Ushbp1Q8R370 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ushbp1Q8R370 Gm9449-201ENSMUST00000207265 1011 ntBASIC17.74■□□□□ 0.43
Ushbp1Q8R370 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ushbp1Q8R370 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ushbp1Q8R370 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ushbp1Q8R370 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ushbp1Q8R370 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ushbp1Q8R370 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ushbp1Q8R370 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Ushbp1Q8R370 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ushbp1Q8R370 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ushbp1Q8R370 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ushbp1Q8R370 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ushbp1Q8R370 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Ushbp1Q8R370 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ushbp1Q8R370 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ushbp1Q8R370 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ushbp1Q8R370 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ushbp1Q8R370 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Ushbp1Q8R370 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Ushbp1Q8R370 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC17.73■□□□□ 0.43
Ushbp1Q8R370 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ushbp1Q8R370 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ushbp1Q8R370 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Ushbp1Q8R370 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC17.73■□□□□ 0.43
Ushbp1Q8R370 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ushbp1Q8R370 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ushbp1Q8R370 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Ushbp1Q8R370 Gm1818-201ENSMUST00000169406 1184 ntBASIC17.73■□□□□ 0.43
Ushbp1Q8R370 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Ushbp1Q8R370 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC17.73■□□□□ 0.43
Ushbp1Q8R370 AC108846.1-201ENSMUST00000214531 513 ntBASIC17.73■□□□□ 0.43
Ushbp1Q8R370 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ushbp1Q8R370 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ushbp1Q8R370 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
Ushbp1Q8R370 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Ushbp1Q8R370 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ushbp1Q8R370 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Ushbp1Q8R370 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Ushbp1Q8R370 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ushbp1Q8R370 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ushbp1Q8R370 Gm38327-201ENSMUST00000195852 1755 ntBASIC17.73■□□□□ 0.43
Ushbp1Q8R370 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ushbp1Q8R370 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Ushbp1Q8R370 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ushbp1Q8R370 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ushbp1Q8R370 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC17.72■□□□□ 0.43
Ushbp1Q8R370 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ushbp1Q8R370 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
Ushbp1Q8R370 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ushbp1Q8R370 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Ushbp1Q8R370 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC17.72■□□□□ 0.43
Ushbp1Q8R370 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC17.72■□□□□ 0.43
Ushbp1Q8R370 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ushbp1Q8R370 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Ushbp1Q8R370 Mir6404-201ENSMUST00000183699 94 ntBASIC17.72■□□□□ 0.43
Ushbp1Q8R370 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC17.72■□□□□ 0.43
Ushbp1Q8R370 AC161829.1-201ENSMUST00000220298 281 ntBASIC17.72■□□□□ 0.43
Ushbp1Q8R370 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ushbp1Q8R370 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Ushbp1Q8R370 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Ushbp1Q8R370 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Ushbp1Q8R370 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Ushbp1Q8R370 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Ushbp1Q8R370 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Ushbp1Q8R370 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Ushbp1Q8R370 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Ushbp1Q8R370 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Ushbp1Q8R370 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Ushbp1Q8R370 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Ushbp1Q8R370 Rps4l-201ENSMUST00000071745 943 ntBASIC17.71■□□□□ 0.43
Ushbp1Q8R370 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Ushbp1Q8R370 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Ushbp1Q8R370 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Ushbp1Q8R370 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Ushbp1Q8R370 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC17.71■□□□□ 0.43
Ushbp1Q8R370 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
Ushbp1Q8R370 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.42
Ushbp1Q8R370 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC17.7■□□□□ 0.42
Ushbp1Q8R370 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ushbp1Q8R370 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Ushbp1Q8R370 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ushbp1Q8R370 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Ushbp1Q8R370 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ushbp1Q8R370 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC17.7■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 35.1 ms