Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trub1Q8C0D0 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trub1Q8C0D0 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trub1Q8C0D0 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trub1Q8C0D0 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trub1Q8C0D0 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trub1Q8C0D0 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trub1Q8C0D0 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trub1Q8C0D0 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trub1Q8C0D0 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trub1Q8C0D0 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trub1Q8C0D0 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trub1Q8C0D0 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trub1Q8C0D0 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Trub1Q8C0D0 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC16.35■□□□□ 0.21
Trub1Q8C0D0 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trub1Q8C0D0 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Trub1Q8C0D0 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trub1Q8C0D0 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
Trub1Q8C0D0 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC16.35■□□□□ 0.21
Trub1Q8C0D0 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC16.35■□□□□ 0.21
Trub1Q8C0D0 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC16.35■□□□□ 0.21
Trub1Q8C0D0 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC16.35■□□□□ 0.21
Trub1Q8C0D0 Gm27357-201ENSMUST00000183754 135 ntBASIC16.35■□□□□ 0.21
Trub1Q8C0D0 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC16.35■□□□□ 0.21
Trub1Q8C0D0 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Trub1Q8C0D0 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trub1Q8C0D0 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trub1Q8C0D0 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trub1Q8C0D0 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Trub1Q8C0D0 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Trub1Q8C0D0 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trub1Q8C0D0 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Trub1Q8C0D0 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC16.34■□□□□ 0.21
Trub1Q8C0D0 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trub1Q8C0D0 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trub1Q8C0D0 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trub1Q8C0D0 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trub1Q8C0D0 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Trub1Q8C0D0 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Trub1Q8C0D0 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trub1Q8C0D0 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trub1Q8C0D0 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC16.34■□□□□ 0.21
Trub1Q8C0D0 AC163637.1-201ENSMUST00000215491 1894 ntBASIC16.34■□□□□ 0.21
Trub1Q8C0D0 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trub1Q8C0D0 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC16.34■□□□□ 0.21
Trub1Q8C0D0 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC16.34■□□□□ 0.21
Trub1Q8C0D0 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Trub1Q8C0D0 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC16.34■□□□□ 0.21
Trub1Q8C0D0 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trub1Q8C0D0 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trub1Q8C0D0 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Trub1Q8C0D0 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trub1Q8C0D0 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trub1Q8C0D0 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Trub1Q8C0D0 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trub1Q8C0D0 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trub1Q8C0D0 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trub1Q8C0D0 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trub1Q8C0D0 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trub1Q8C0D0 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC16.34■□□□□ 0.21
Trub1Q8C0D0 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trub1Q8C0D0 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Trub1Q8C0D0 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
Trub1Q8C0D0 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC16.33■□□□□ 0.21
Trub1Q8C0D0 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Trub1Q8C0D0 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
Trub1Q8C0D0 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Trub1Q8C0D0 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Trub1Q8C0D0 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trub1Q8C0D0 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trub1Q8C0D0 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Trub1Q8C0D0 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
Trub1Q8C0D0 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC16.33■□□□□ 0.2
Trub1Q8C0D0 Gm14859-201ENSMUST00000117752 357 ntBASIC16.33■□□□□ 0.2
Trub1Q8C0D0 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
Trub1Q8C0D0 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC16.33■□□□□ 0.2
Trub1Q8C0D0 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC16.33■□□□□ 0.2
Trub1Q8C0D0 AC124569.2-201ENSMUST00000225998 818 ntBASIC16.33■□□□□ 0.2
Trub1Q8C0D0 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trub1Q8C0D0 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trub1Q8C0D0 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trub1Q8C0D0 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trub1Q8C0D0 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trub1Q8C0D0 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trub1Q8C0D0 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trub1Q8C0D0 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
Trub1Q8C0D0 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Trub1Q8C0D0 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trub1Q8C0D0 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Trub1Q8C0D0 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Trub1Q8C0D0 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Trub1Q8C0D0 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Trub1Q8C0D0 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trub1Q8C0D0 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trub1Q8C0D0 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trub1Q8C0D0 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trub1Q8C0D0 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trub1Q8C0D0 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Trub1Q8C0D0 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 57.9 ms