Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Limch1Q3UH68 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Limch1Q3UH68 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Limch1Q3UH68 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Limch1Q3UH68 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Limch1Q3UH68 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Limch1Q3UH68 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Limch1Q3UH68 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Limch1Q3UH68 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Limch1Q3UH68 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Limch1Q3UH68 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Limch1Q3UH68 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Limch1Q3UH68 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Limch1Q3UH68 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Limch1Q3UH68 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Limch1Q3UH68 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Limch1Q3UH68 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Limch1Q3UH68 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Limch1Q3UH68 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Limch1Q3UH68 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Limch1Q3UH68 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC18.63■□□□□ 0.57
Limch1Q3UH68 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Limch1Q3UH68 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Limch1Q3UH68 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Limch1Q3UH68 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC18.63■□□□□ 0.57
Limch1Q3UH68 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC18.63■□□□□ 0.57
Limch1Q3UH68 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Limch1Q3UH68 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC18.63■□□□□ 0.57
Limch1Q3UH68 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Limch1Q3UH68 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Limch1Q3UH68 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Limch1Q3UH68 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Limch1Q3UH68 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Limch1Q3UH68 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Limch1Q3UH68 Prob1-201ENSMUST00000097619 3021 ntBASIC18.63■□□□□ 0.57
Limch1Q3UH68 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Limch1Q3UH68 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Limch1Q3UH68 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Limch1Q3UH68 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Limch1Q3UH68 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Limch1Q3UH68 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Limch1Q3UH68 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Limch1Q3UH68 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Limch1Q3UH68 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC18.62■□□□□ 0.57
Limch1Q3UH68 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Limch1Q3UH68 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Limch1Q3UH68 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Limch1Q3UH68 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Limch1Q3UH68 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Limch1Q3UH68 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Limch1Q3UH68 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Limch1Q3UH68 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Limch1Q3UH68 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Limch1Q3UH68 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Limch1Q3UH68 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC18.61■□□□□ 0.57
Limch1Q3UH68 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Limch1Q3UH68 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Limch1Q3UH68 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Limch1Q3UH68 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Limch1Q3UH68 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Limch1Q3UH68 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Limch1Q3UH68 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Limch1Q3UH68 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
Limch1Q3UH68 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Limch1Q3UH68 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC18.61■□□□□ 0.57
Limch1Q3UH68 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC18.61■□□□□ 0.57
Limch1Q3UH68 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Limch1Q3UH68 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Limch1Q3UH68 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC18.61■□□□□ 0.57
Limch1Q3UH68 AW822252-206ENSMUST00000208904 237 ntBASIC18.61■□□□□ 0.57
Limch1Q3UH68 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Limch1Q3UH68 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Limch1Q3UH68 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Limch1Q3UH68 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Limch1Q3UH68 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC18.61■□□□□ 0.57
Limch1Q3UH68 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Limch1Q3UH68 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Limch1Q3UH68 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Limch1Q3UH68 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Limch1Q3UH68 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Limch1Q3UH68 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
Limch1Q3UH68 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Limch1Q3UH68 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Limch1Q3UH68 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Limch1Q3UH68 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Limch1Q3UH68 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Limch1Q3UH68 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Limch1Q3UH68 Gm11452-201ENSMUST00000122376 690 ntBASIC18.6■□□□□ 0.57
Limch1Q3UH68 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Limch1Q3UH68 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Limch1Q3UH68 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC18.6■□□□□ 0.57
Limch1Q3UH68 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Limch1Q3UH68 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Limch1Q3UH68 AC159301.1-201ENSMUST00000225130 1182 ntBASIC18.6■□□□□ 0.57
Limch1Q3UH68 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC18.6■□□□□ 0.57
Limch1Q3UH68 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Limch1Q3UH68 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Limch1Q3UH68 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Limch1Q3UH68 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC18.6■□□□□ 0.57
Limch1Q3UH68 Zkscan3-208ENSMUST00000224820 5398 ntBASIC18.6■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 30.4 ms