Protein–RNA interactions for Protein: P39038

Cdh4, Cadherin-4, mousemouse

Predictions only

Length 913 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh4P39038 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Cdh4P39038 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Cdh4P39038 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Cdh4P39038 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC15.17■□□□□ 0.02
Cdh4P39038 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Cdh4P39038 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Cdh4P39038 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Cdh4P39038 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC15.17■□□□□ 0.02
Cdh4P39038 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Cdh4P39038 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cdh4P39038 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cdh4P39038 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cdh4P39038 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cdh4P39038 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cdh4P39038 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cdh4P39038 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cdh4P39038 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Cdh4P39038 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cdh4P39038 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cdh4P39038 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Cdh4P39038 Gm8349-201ENSMUST00000182720 1003 ntBASIC15.16■□□□□ 0.02
Cdh4P39038 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC15.16■□□□□ 0.02
Cdh4P39038 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC15.16■□□□□ 0.02
Cdh4P39038 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC15.16■□□□□ 0.02
Cdh4P39038 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cdh4P39038 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cdh4P39038 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cdh4P39038 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Cdh4P39038 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Cdh4P39038 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC15.16■□□□□ 0.02
Cdh4P39038 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
Cdh4P39038 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Cdh4P39038 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Cdh4P39038 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cdh4P39038 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cdh4P39038 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC15.15■□□□□ 0.02
Cdh4P39038 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cdh4P39038 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC15.15■□□□□ 0.02
Cdh4P39038 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
Cdh4P39038 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC15.15■□□□□ 0.02
Cdh4P39038 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC15.15■□□□□ 0.02
Cdh4P39038 Gm43347-201ENSMUST00000200226 580 ntBASIC15.15■□□□□ 0.02
Cdh4P39038 Gm9172-201ENSMUST00000212092 954 ntBASIC15.15■□□□□ 0.02
Cdh4P39038 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Cdh4P39038 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cdh4P39038 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Cdh4P39038 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Cdh4P39038 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cdh4P39038 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cdh4P39038 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cdh4P39038 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC15.15■□□□□ 0.02
Cdh4P39038 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Cdh4P39038 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC15.15■□□□□ 0.02
Cdh4P39038 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
Cdh4P39038 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cdh4P39038 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cdh4P39038 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC15.15■□□□□ 0.02
Cdh4P39038 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Cdh4P39038 Dlc1-203ENSMUST00000098826 6241 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdh4P39038 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Cdh4P39038 Gm44443-201ENSMUST00000204396 5633 ntBASIC15.14■□□□□ 0.01
Cdh4P39038 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Cdh4P39038 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdh4P39038 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Cdh4P39038 Tchh-201ENSMUST00000064257 5823 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Cdh4P39038 Lpgat1-201ENSMUST00000110855 7233 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdh4P39038 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC15.14■□□□□ 0.01
Cdh4P39038 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC15.14■□□□□ 0.01
Cdh4P39038 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdh4P39038 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
Cdh4P39038 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdh4P39038 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC15.14■□□□□ 0.01
Cdh4P39038 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdh4P39038 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdh4P39038 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdh4P39038 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdh4P39038 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdh4P39038 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Cdh4P39038 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdh4P39038 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdh4P39038 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Cdh4P39038 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Cdh4P39038 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdh4P39038 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdh4P39038 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Cdh4P39038 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdh4P39038 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC15.13■□□□□ 0.01
Cdh4P39038 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdh4P39038 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdh4P39038 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdh4P39038 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC15.13■□□□□ 0.01
Cdh4P39038 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC15.13■□□□□ 0.01
Cdh4P39038 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdh4P39038 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Cdh4P39038 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdh4P39038 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Cdh4P39038 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Cdh4P39038 Gm27459-201ENSMUST00000184860 107 ntBASIC15.13■□□□□ 0.01
Cdh4P39038 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Cdh4P39038 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 41.6 ms