Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc9Q8VC31 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc9Q8VC31 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc9Q8VC31 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc9Q8VC31 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc9Q8VC31 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc9Q8VC31 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC19.22■□□□□ 0.67
Ccdc9Q8VC31 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc9Q8VC31 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc9Q8VC31 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc9Q8VC31 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC19.21■□□□□ 0.67
Ccdc9Q8VC31 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC19.21■□□□□ 0.67
Ccdc9Q8VC31 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc9Q8VC31 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc9Q8VC31 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc9Q8VC31 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Ccdc9Q8VC31 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc9Q8VC31 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc9Q8VC31 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc9Q8VC31 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc9Q8VC31 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc9Q8VC31 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc9Q8VC31 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc9Q8VC31 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
Ccdc9Q8VC31 Ddx42-201ENSMUST00000021046 4011 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc9Q8VC31 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc9Q8VC31 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc9Q8VC31 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
Ccdc9Q8VC31 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
Ccdc9Q8VC31 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
Ccdc9Q8VC31 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc9Q8VC31 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Ccdc9Q8VC31 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc9Q8VC31 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc9Q8VC31 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC19.2■□□□□ 0.66
Ccdc9Q8VC31 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC19.2■□□□□ 0.66
Ccdc9Q8VC31 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc9Q8VC31 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc9Q8VC31 AC121805.2-201ENSMUST00000218808 2538 ntBASIC19.2■□□□□ 0.66
Ccdc9Q8VC31 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
Ccdc9Q8VC31 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc9Q8VC31 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc9Q8VC31 Zfp219-201ENSMUST00000067549 2933 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc9Q8VC31 Ube2o-201ENSMUST00000082152 5205 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc9Q8VC31 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
Ccdc9Q8VC31 D430041D05Rik-201ENSMUST00000089726 10124 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Ccdc9Q8VC31 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc9Q8VC31 Odf2-203ENSMUST00000113755 2305 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc9Q8VC31 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
Ccdc9Q8VC31 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc9Q8VC31 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Ccdc9Q8VC31 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC19.19■□□□□ 0.66
Ccdc9Q8VC31 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC19.19■□□□□ 0.66
Ccdc9Q8VC31 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc9Q8VC31 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC19.19■□□□□ 0.66
Ccdc9Q8VC31 Gm7712-202ENSMUST00000222331 1510 ntBASIC19.19■□□□□ 0.66
Ccdc9Q8VC31 Cblb-201ENSMUST00000114471 6648 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc9Q8VC31 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc9Q8VC31 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc9Q8VC31 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC19.19■□□□□ 0.66
Ccdc9Q8VC31 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc9Q8VC31 Nop53-201ENSMUST00000044158 3176 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ccdc9Q8VC31 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ccdc9Q8VC31 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ccdc9Q8VC31 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ccdc9Q8VC31 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ccdc9Q8VC31 Ntrk2-209ENSMUST00000225950 2640 ntBASIC19.18■□□□□ 0.66
Ccdc9Q8VC31 Gm12933-201ENSMUST00000120203 872 ntBASIC19.18■□□□□ 0.66
Ccdc9Q8VC31 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Ccdc9Q8VC31 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Ccdc9Q8VC31 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC19.18■□□□□ 0.66
Ccdc9Q8VC31 Pde4dip-201ENSMUST00000045243 6185 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ccdc9Q8VC31 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ccdc9Q8VC31 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Ccdc9Q8VC31 Dis3-201ENSMUST00000042471 5150 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Ccdc9Q8VC31 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Ccdc9Q8VC31 Cep85l-205ENSMUST00000220443 7425 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
Ccdc9Q8VC31 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
Ccdc9Q8VC31 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ccdc9Q8VC31 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Ccdc9Q8VC31 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Ccdc9Q8VC31 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ccdc9Q8VC31 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ccdc9Q8VC31 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ccdc9Q8VC31 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Ccdc9Q8VC31 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Ccdc9Q8VC31 Armcx1-202ENSMUST00000051256 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ccdc9Q8VC31 Fbxo34-203ENSMUST00000163324 3132 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
Ccdc9Q8VC31 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Ccdc9Q8VC31 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC19.17■□□□□ 0.66
Ccdc9Q8VC31 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ccdc9Q8VC31 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ccdc9Q8VC31 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC19.17■□□□□ 0.66
Ccdc9Q8VC31 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ccdc9Q8VC31 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC19.17■□□□□ 0.66
Ccdc9Q8VC31 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Ccdc9Q8VC31 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ccdc9Q8VC31 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Ccdc9Q8VC31 Gm38058-201ENSMUST00000194323 4368 ntBASIC19.16■□□□□ 0.66
Ccdc9Q8VC31 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 51 ms