Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Nkx3-1P97436 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Nkx3-1P97436 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC13.72□□□□□ -0.21
Nkx3-1P97436 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Nkx3-1P97436 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Nkx3-1P97436 Gm11841-201ENSMUST00000117060 1963 ntBASIC13.72□□□□□ -0.21
Nkx3-1P97436 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Nkx3-1P97436 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Nkx3-1P97436 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Nkx3-1P97436 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Nkx3-1P97436 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Nkx3-1P97436 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Nkx3-1P97436 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Nkx3-1P97436 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Nkx3-1P97436 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Nkx3-1P97436 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
Nkx3-1P97436 Gm42918-201ENSMUST00000199249 1580 ntBASIC13.71□□□□□ -0.21
Nkx3-1P97436 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC13.71□□□□□ -0.21
Nkx3-1P97436 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Nkx3-1P97436 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
Nkx3-1P97436 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Nkx3-1P97436 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Nkx3-1P97436 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
Nkx3-1P97436 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Nkx3-1P97436 AC084391.1-201ENSMUST00000200651 141 ntBASIC13.71□□□□□ -0.21
Nkx3-1P97436 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC13.71□□□□□ -0.21
Nkx3-1P97436 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Nkx3-1P97436 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
Nkx3-1P97436 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Nkx3-1P97436 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC13.71□□□□□ -0.22
Nkx3-1P97436 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Nkx3-1P97436 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Nkx3-1P97436 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Nkx3-1P97436 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Nkx3-1P97436 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Nkx3-1P97436 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Nkx3-1P97436 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Nkx3-1P97436 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Nkx3-1P97436 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Nkx3-1P97436 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Nkx3-1P97436 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Nkx3-1P97436 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
Nkx3-1P97436 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Nkx3-1P97436 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Nkx3-1P97436 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Nkx3-1P97436 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Nkx3-1P97436 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Nkx3-1P97436 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Nkx3-1P97436 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Nkx3-1P97436 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Nkx3-1P97436 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Nkx3-1P97436 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Nkx3-1P97436 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Nkx3-1P97436 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Nkx3-1P97436 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Nkx3-1P97436 Gm24513-201ENSMUST00000174964 138 ntBASIC13.7□□□□□ -0.22
Nkx3-1P97436 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC13.7□□□□□ -0.22
Nkx3-1P97436 Gm27397-201ENSMUST00000184997 107 ntBASIC13.7□□□□□ -0.22
Nkx3-1P97436 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC13.7□□□□□ -0.22
Nkx3-1P97436 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Nkx3-1P97436 Gm45683-201ENSMUST00000210825 1247 ntBASIC13.7□□□□□ -0.22
Nkx3-1P97436 AC225888.1-201ENSMUST00000227184 728 ntBASIC13.7□□□□□ -0.22
Nkx3-1P97436 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Nkx3-1P97436 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Nkx3-1P97436 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Nkx3-1P97436 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Nkx3-1P97436 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Nkx3-1P97436 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Nkx3-1P97436 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Nkx3-1P97436 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Nkx3-1P97436 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Nkx3-1P97436 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Nkx3-1P97436 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Nkx3-1P97436 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Nkx3-1P97436 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Nkx3-1P97436 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC13.69□□□□□ -0.22
Nkx3-1P97436 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Nkx3-1P97436 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Nkx3-1P97436 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Nkx3-1P97436 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Nkx3-1P97436 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Nkx3-1P97436 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC13.69□□□□□ -0.22
Nkx3-1P97436 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Nkx3-1P97436 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Nkx3-1P97436 Gm4995-201ENSMUST00000117247 432 ntBASIC13.69□□□□□ -0.22
Nkx3-1P97436 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC13.69□□□□□ -0.22
Nkx3-1P97436 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC13.69□□□□□ -0.22
Nkx3-1P97436 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC13.69□□□□□ -0.22
Nkx3-1P97436 Gm27646-201ENSMUST00000183989 110 ntBASIC13.69□□□□□ -0.22
Nkx3-1P97436 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC13.69□□□□□ -0.22
Nkx3-1P97436 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Nkx3-1P97436 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Nkx3-1P97436 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Nkx3-1P97436 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC13.69□□□□□ -0.22
Nkx3-1P97436 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Nkx3-1P97436 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Nkx3-1P97436 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Nkx3-1P97436 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Nkx3-1P97436 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Nkx3-1P97436 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 60.9 ms