Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC32.22■■■□□ 2.75
Usp40Q8BWR4 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC32.2■■■□□ 2.75
Usp40Q8BWR4 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC32.2■■■□□ 2.75
Usp40Q8BWR4 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC32.2■■■□□ 2.75
Usp40Q8BWR4 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
Usp40Q8BWR4 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC32.19■■■□□ 2.74
Usp40Q8BWR4 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC32.19■■■□□ 2.74
Usp40Q8BWR4 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
Usp40Q8BWR4 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC32.18■■■□□ 2.74
Usp40Q8BWR4 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC32.17■■■□□ 2.74
Usp40Q8BWR4 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC32.17■■■□□ 2.74
Usp40Q8BWR4 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
Usp40Q8BWR4 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
Usp40Q8BWR4 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
Usp40Q8BWR4 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC32.16■■■□□ 2.74
Usp40Q8BWR4 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC32.15■■■□□ 2.74
Usp40Q8BWR4 Gm7332-201ENSMUST00000118351 454 ntBASIC32.15■■■□□ 2.74
Usp40Q8BWR4 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC32.15■■■□□ 2.74
Usp40Q8BWR4 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC32.15■■■□□ 2.74
Usp40Q8BWR4 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC32.15■■■□□ 2.74
Usp40Q8BWR4 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC32.15■■■□□ 2.74
Usp40Q8BWR4 Gm14523-201ENSMUST00000117260 558 ntBASIC32.14■■■□□ 2.74
Usp40Q8BWR4 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC32.14■■■□□ 2.74
Usp40Q8BWR4 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC32.14■■■□□ 2.74
Usp40Q8BWR4 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC32.14■■■□□ 2.74
Usp40Q8BWR4 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC32.14■■■□□ 2.74
Usp40Q8BWR4 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
Usp40Q8BWR4 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
Usp40Q8BWR4 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
Usp40Q8BWR4 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC32.13■■■□□ 2.73
Usp40Q8BWR4 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC32.13■■■□□ 2.73
Usp40Q8BWR4 AC153911.1-201ENSMUST00000220378 758 ntBASIC32.13■■■□□ 2.73
Usp40Q8BWR4 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC32.13■■■□□ 2.73
Usp40Q8BWR4 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
Usp40Q8BWR4 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
Usp40Q8BWR4 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC32.11■■■□□ 2.73
Usp40Q8BWR4 Terc-201ENSMUST00000082862 423 ntBASIC32.11■■■□□ 2.73
Usp40Q8BWR4 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC32.1■■■□□ 2.73
Usp40Q8BWR4 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
Usp40Q8BWR4 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC32.1■■■□□ 2.73
Usp40Q8BWR4 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
Usp40Q8BWR4 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC32.06■■■□□ 2.72
Usp40Q8BWR4 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC32.06■■■□□ 2.72
Usp40Q8BWR4 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC32.05■■■□□ 2.72
Usp40Q8BWR4 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC32.05■■■□□ 2.72
Usp40Q8BWR4 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC32.05■■■□□ 2.72
Usp40Q8BWR4 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC32.05■■■□□ 2.72
Usp40Q8BWR4 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC32.05■■■□□ 2.72
Usp40Q8BWR4 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC32.05■■■□□ 2.72
Usp40Q8BWR4 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC32.05■■■□□ 2.72
Usp40Q8BWR4 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
Usp40Q8BWR4 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
Usp40Q8BWR4 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
Usp40Q8BWR4 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
Usp40Q8BWR4 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
Usp40Q8BWR4 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
Usp40Q8BWR4 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
Usp40Q8BWR4 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC32.03■■■□□ 2.72
Usp40Q8BWR4 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
Usp40Q8BWR4 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC32.02■■■□□ 2.72
Usp40Q8BWR4 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC32.02■■■□□ 2.72
Usp40Q8BWR4 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC32.02■■■□□ 2.72
Usp40Q8BWR4 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
Usp40Q8BWR4 Fezf2-202ENSMUST00000224023 1917 ntBASIC32.02■■■□□ 2.72
Usp40Q8BWR4 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.71
Usp40Q8BWR4 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.71
Usp40Q8BWR4 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC32■■■□□ 2.71
Usp40Q8BWR4 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC32■■■□□ 2.71
Usp40Q8BWR4 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC32■■■□□ 2.71
Usp40Q8BWR4 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC32■■■□□ 2.71
Usp40Q8BWR4 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC32■■■□□ 2.71
Usp40Q8BWR4 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
Usp40Q8BWR4 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
Usp40Q8BWR4 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
Usp40Q8BWR4 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC31.98■■■□□ 2.71
Usp40Q8BWR4 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC31.98■■■□□ 2.71
Usp40Q8BWR4 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
Usp40Q8BWR4 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC31.97■■■□□ 2.71
Usp40Q8BWR4 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
Usp40Q8BWR4 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
Usp40Q8BWR4 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC31.96■■■□□ 2.71
Usp40Q8BWR4 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC31.96■■■□□ 2.71
Usp40Q8BWR4 Gm4419-202ENSMUST00000226239 1431 ntBASIC31.95■■■□□ 2.71
Usp40Q8BWR4 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
Usp40Q8BWR4 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.7
Usp40Q8BWR4 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC31.95■■■□□ 2.7
Usp40Q8BWR4 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.7
Usp40Q8BWR4 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC31.94■■■□□ 2.7
Usp40Q8BWR4 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC31.94■■■□□ 2.7
Usp40Q8BWR4 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
Usp40Q8BWR4 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
Usp40Q8BWR4 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC31.93■■■□□ 2.7
Usp40Q8BWR4 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
Usp40Q8BWR4 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
Usp40Q8BWR4 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC31.92■■■□□ 2.7
Usp40Q8BWR4 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC31.92■■■□□ 2.7
Usp40Q8BWR4 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
Usp40Q8BWR4 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
Usp40Q8BWR4 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
Usp40Q8BWR4 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
Retrieved 100 of 76,532 protein–RNA pairs in 17.2 ms