Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Ubfd1Q78JW9 Gm9910-201ENSMUST00000195385 1550 ntBASIC22.53■■□□□ 1.2
Ubfd1Q78JW9 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Ubfd1Q78JW9 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Ubfd1Q78JW9 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC22.52■■□□□ 1.2
Ubfd1Q78JW9 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Ubfd1Q78JW9 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Ubfd1Q78JW9 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Ubfd1Q78JW9 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Ubfd1Q78JW9 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Ubfd1Q78JW9 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Ubfd1Q78JW9 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Ubfd1Q78JW9 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Ubfd1Q78JW9 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Ubfd1Q78JW9 Gm4419-202ENSMUST00000226239 1431 ntBASIC22.49■■□□□ 1.19
Ubfd1Q78JW9 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
Ubfd1Q78JW9 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC22.49■■□□□ 1.19
Ubfd1Q78JW9 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Ubfd1Q78JW9 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC22.48■■□□□ 1.19
Ubfd1Q78JW9 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Ubfd1Q78JW9 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Ubfd1Q78JW9 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC22.48■■□□□ 1.19
Ubfd1Q78JW9 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Ubfd1Q78JW9 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Ubfd1Q78JW9 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC22.48■■□□□ 1.19
Ubfd1Q78JW9 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Ubfd1Q78JW9 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Ubfd1Q78JW9 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Ubfd1Q78JW9 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC22.47■■□□□ 1.19
Ubfd1Q78JW9 Terc-201ENSMUST00000082862 423 ntBASIC22.47■■□□□ 1.19
Ubfd1Q78JW9 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Ubfd1Q78JW9 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Ubfd1Q78JW9 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Ubfd1Q78JW9 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Ubfd1Q78JW9 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC22.46■■□□□ 1.19
Ubfd1Q78JW9 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Ubfd1Q78JW9 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC22.46■■□□□ 1.19
Ubfd1Q78JW9 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC22.45■■□□□ 1.18
Ubfd1Q78JW9 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.18
Ubfd1Q78JW9 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC22.45■■□□□ 1.18
Ubfd1Q78JW9 Gm12366-201ENSMUST00000121722 873 ntBASIC22.45■■□□□ 1.18
Ubfd1Q78JW9 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC22.45■■□□□ 1.18
Ubfd1Q78JW9 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC22.45■■□□□ 1.18
Ubfd1Q78JW9 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
Ubfd1Q78JW9 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC22.45■■□□□ 1.18
Ubfd1Q78JW9 Gm5786-201ENSMUST00000085368 882 ntBASIC22.45■■□□□ 1.18
Ubfd1Q78JW9 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Ubfd1Q78JW9 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Ubfd1Q78JW9 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
Ubfd1Q78JW9 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Ubfd1Q78JW9 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC22.43■■□□□ 1.18
Ubfd1Q78JW9 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Ubfd1Q78JW9 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
Ubfd1Q78JW9 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC22.43■■□□□ 1.18
Ubfd1Q78JW9 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
Ubfd1Q78JW9 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
Ubfd1Q78JW9 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
Ubfd1Q78JW9 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC22.42■■□□□ 1.18
Ubfd1Q78JW9 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC22.42■■□□□ 1.18
Ubfd1Q78JW9 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC22.42■■□□□ 1.18
Ubfd1Q78JW9 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Ubfd1Q78JW9 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Ubfd1Q78JW9 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Ubfd1Q78JW9 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC22.41■■□□□ 1.18
Ubfd1Q78JW9 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Ubfd1Q78JW9 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
Ubfd1Q78JW9 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Ubfd1Q78JW9 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
Ubfd1Q78JW9 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Ubfd1Q78JW9 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC22.39■■□□□ 1.18
Ubfd1Q78JW9 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
Ubfd1Q78JW9 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Ubfd1Q78JW9 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Ubfd1Q78JW9 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC22.37■■□□□ 1.17
Ubfd1Q78JW9 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Ubfd1Q78JW9 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Ubfd1Q78JW9 Gm27502-201ENSMUST00000183495 199 ntBASIC22.36■■□□□ 1.17
Ubfd1Q78JW9 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Ubfd1Q78JW9 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Ubfd1Q78JW9 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.17
Ubfd1Q78JW9 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
Ubfd1Q78JW9 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
Ubfd1Q78JW9 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC22.35■■□□□ 1.17
Ubfd1Q78JW9 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Ubfd1Q78JW9 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Ubfd1Q78JW9 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
Ubfd1Q78JW9 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Ubfd1Q78JW9 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC22.34■■□□□ 1.17
Ubfd1Q78JW9 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Ubfd1Q78JW9 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Ubfd1Q78JW9 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.17
Ubfd1Q78JW9 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
Ubfd1Q78JW9 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.17
Ubfd1Q78JW9 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Ubfd1Q78JW9 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
Ubfd1Q78JW9 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Ubfd1Q78JW9 Gm14523-201ENSMUST00000117260 558 ntBASIC22.32■■□□□ 1.16
Ubfd1Q78JW9 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC22.32■■□□□ 1.16
Ubfd1Q78JW9 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC22.32■■□□□ 1.16
Ubfd1Q78JW9 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Retrieved 100 of 76,532 protein–RNA pairs in 58.9 ms