Protein–RNA interactions for Protein: Q5R1H8

Trav8d-1, T cell receptor alpha variable 8D-1 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8d-1Q5R1H8 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Trav8d-1Q5R1H8 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trav8d-1Q5R1H8 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
Trav8d-1Q5R1H8 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Trav8d-1Q5R1H8 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Trav8d-1Q5R1H8 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Trav8d-1Q5R1H8 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trav8d-1Q5R1H8 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trav8d-1Q5R1H8 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Trav8d-1Q5R1H8 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trav8d-1Q5R1H8 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Trav8d-1Q5R1H8 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trav8d-1Q5R1H8 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trav8d-1Q5R1H8 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Trav8d-1Q5R1H8 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav8d-1Q5R1H8 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Trav8d-1Q5R1H8 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav8d-1Q5R1H8 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav8d-1Q5R1H8 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
Trav8d-1Q5R1H8 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav8d-1Q5R1H8 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trav8d-1Q5R1H8 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trav8d-1Q5R1H8 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trav8d-1Q5R1H8 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Trav8d-1Q5R1H8 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC18.62■□□□□ 0.57
Trav8d-1Q5R1H8 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trav8d-1Q5R1H8 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav8d-1Q5R1H8 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trav8d-1Q5R1H8 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Trav8d-1Q5R1H8 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trav8d-1Q5R1H8 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav8d-1Q5R1H8 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC18.61■□□□□ 0.57
Trav8d-1Q5R1H8 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav8d-1Q5R1H8 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC18.6■□□□□ 0.57
Trav8d-1Q5R1H8 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trav8d-1Q5R1H8 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC18.59■□□□□ 0.57
Trav8d-1Q5R1H8 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Trav8d-1Q5R1H8 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trav8d-1Q5R1H8 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC18.58■□□□□ 0.56
Trav8d-1Q5R1H8 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC18.58■□□□□ 0.56
Trav8d-1Q5R1H8 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC18.58■□□□□ 0.56
Trav8d-1Q5R1H8 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC18.58■□□□□ 0.56
Trav8d-1Q5R1H8 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trav8d-1Q5R1H8 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trav8d-1Q5R1H8 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trav8d-1Q5R1H8 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trav8d-1Q5R1H8 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Trav8d-1Q5R1H8 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Trav8d-1Q5R1H8 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav8d-1Q5R1H8 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trav8d-1Q5R1H8 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trav8d-1Q5R1H8 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav8d-1Q5R1H8 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav8d-1Q5R1H8 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC18.56■□□□□ 0.56
Trav8d-1Q5R1H8 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav8d-1Q5R1H8 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav8d-1Q5R1H8 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav8d-1Q5R1H8 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav8d-1Q5R1H8 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav8d-1Q5R1H8 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
Trav8d-1Q5R1H8 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav8d-1Q5R1H8 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav8d-1Q5R1H8 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav8d-1Q5R1H8 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav8d-1Q5R1H8 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav8d-1Q5R1H8 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC18.55■□□□□ 0.56
Trav8d-1Q5R1H8 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav8d-1Q5R1H8 Gm20634-201ENSMUST00000090779 2956 ntBASIC18.54■□□□□ 0.56
Trav8d-1Q5R1H8 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav8d-1Q5R1H8 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Trav8d-1Q5R1H8 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC18.54■□□□□ 0.56
Trav8d-1Q5R1H8 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Trav8d-1Q5R1H8 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav8d-1Q5R1H8 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Trav8d-1Q5R1H8 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav8d-1Q5R1H8 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Trav8d-1Q5R1H8 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav8d-1Q5R1H8 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav8d-1Q5R1H8 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Trav8d-1Q5R1H8 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC18.52■□□□□ 0.56
Trav8d-1Q5R1H8 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC18.52■□□□□ 0.56
Trav8d-1Q5R1H8 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trav8d-1Q5R1H8 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trav8d-1Q5R1H8 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Trav8d-1Q5R1H8 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Trav8d-1Q5R1H8 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Trav8d-1Q5R1H8 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC18.51■□□□□ 0.55
Trav8d-1Q5R1H8 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav8d-1Q5R1H8 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Trav8d-1Q5R1H8 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Trav8d-1Q5R1H8 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC18.51■□□□□ 0.55
Trav8d-1Q5R1H8 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trav8d-1Q5R1H8 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trav8d-1Q5R1H8 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
Trav8d-1Q5R1H8 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC18.49■□□□□ 0.55
Trav8d-1Q5R1H8 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trav8d-1Q5R1H8 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav8d-1Q5R1H8 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav8d-1Q5R1H8 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav8d-1Q5R1H8 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC18.48■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 11.2 ms