Protein–RNA interactions for Protein: P97503

Nkx3-2, Homeobox protein Nkx-3.2, mousemouse

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-2P97503 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Nkx3-2P97503 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
Nkx3-2P97503 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Nkx3-2P97503 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Nkx3-2P97503 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Nkx3-2P97503 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Nkx3-2P97503 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Nkx3-2P97503 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Nkx3-2P97503 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Nkx3-2P97503 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Nkx3-2P97503 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Nkx3-2P97503 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
Nkx3-2P97503 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Nkx3-2P97503 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
Nkx3-2P97503 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Nkx3-2P97503 Gm9806-201ENSMUST00000051080 552 ntBASIC21.56■■□□□ 1.04
Nkx3-2P97503 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Nkx3-2P97503 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC21.56■■□□□ 1.04
Nkx3-2P97503 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
Nkx3-2P97503 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Nkx3-2P97503 Scarna2-201ENSMUST00000157560 414 ntBASIC21.55■■□□□ 1.04
Nkx3-2P97503 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Nkx3-2P97503 Cap2-205ENSMUST00000225824 1634 ntBASIC21.55■■□□□ 1.04
Nkx3-2P97503 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Nkx3-2P97503 Gm14121-201ENSMUST00000121441 1380 ntBASIC21.54■■□□□ 1.04
Nkx3-2P97503 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Nkx3-2P97503 Gm9812-201ENSMUST00000061934 968 ntBASIC21.54■■□□□ 1.04
Nkx3-2P97503 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Nkx3-2P97503 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Nkx3-2P97503 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Nkx3-2P97503 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Nkx3-2P97503 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
Nkx3-2P97503 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Nkx3-2P97503 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Nkx3-2P97503 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC21.52■■□□□ 1.04
Nkx3-2P97503 Gm11687-201ENSMUST00000118911 886 ntBASIC21.51■■□□□ 1.03
Nkx3-2P97503 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Nkx3-2P97503 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Nkx3-2P97503 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Nkx3-2P97503 Gm37847-201ENSMUST00000192163 1497 ntBASIC21.5■■□□□ 1.03
Nkx3-2P97503 Gm31748-201ENSMUST00000194938 1497 ntBASIC21.5■■□□□ 1.03
Nkx3-2P97503 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
Nkx3-2P97503 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
Nkx3-2P97503 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Nkx3-2P97503 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Nkx3-2P97503 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Nkx3-2P97503 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
Nkx3-2P97503 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC21.48■■□□□ 1.03
Nkx3-2P97503 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Nkx3-2P97503 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
Nkx3-2P97503 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Nkx3-2P97503 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC21.47■■□□□ 1.03
Nkx3-2P97503 AC122317.2-201ENSMUST00000218708 1248 ntBASIC21.47■■□□□ 1.03
Nkx3-2P97503 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
Nkx3-2P97503 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC21.47■■□□□ 1.03
Nkx3-2P97503 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Nkx3-2P97503 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Nkx3-2P97503 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC21.45■■□□□ 1.02
Nkx3-2P97503 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Nkx3-2P97503 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Nkx3-2P97503 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC21.44■■□□□ 1.02
Nkx3-2P97503 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Nkx3-2P97503 Gm16437-201ENSMUST00000025669 507 ntBASIC21.44■■□□□ 1.02
Nkx3-2P97503 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Nkx3-2P97503 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Nkx3-2P97503 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Nkx3-2P97503 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Nkx3-2P97503 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC21.43■■□□□ 1.02
Nkx3-2P97503 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC21.43■■□□□ 1.02
Nkx3-2P97503 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Nkx3-2P97503 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Nkx3-2P97503 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Nkx3-2P97503 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
Nkx3-2P97503 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Nkx3-2P97503 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Nkx3-2P97503 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
Nkx3-2P97503 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Nkx3-2P97503 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
Nkx3-2P97503 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Nkx3-2P97503 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Nkx3-2P97503 AC153911.1-201ENSMUST00000220378 758 ntBASIC21.4■■□□□ 1.02
Nkx3-2P97503 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
Nkx3-2P97503 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Nkx3-2P97503 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC21.39■■□□□ 1.01
Nkx3-2P97503 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Nkx3-2P97503 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Nkx3-2P97503 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Nkx3-2P97503 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Nkx3-2P97503 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Nkx3-2P97503 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Nkx3-2P97503 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Nkx3-2P97503 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Nkx3-2P97503 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC21.36■■□□□ 1.01
Nkx3-2P97503 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC21.36■■□□□ 1.01
Nkx3-2P97503 Gm12366-201ENSMUST00000121722 873 ntBASIC21.36■■□□□ 1.01
Nkx3-2P97503 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC21.36■■□□□ 1.01
Nkx3-2P97503 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC21.36■■□□□ 1.01
Nkx3-2P97503 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC21.36■■□□□ 1.01
Nkx3-2P97503 Gm5786-201ENSMUST00000085368 882 ntBASIC21.36■■□□□ 1.01
Nkx3-2P97503 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Retrieved 100 of 76,532 protein–RNA pairs in 13 ms