Protein–RNA interactions for Protein: P21237

Bdnf, Brain-derived neurotrophic factor, mousemouse

Predictions only

Length 249 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BdnfP21237 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
BdnfP21237 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
BdnfP21237 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
BdnfP21237 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC21.92■■□□□ 1.1
BdnfP21237 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
BdnfP21237 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
BdnfP21237 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC21.91■■□□□ 1.1
BdnfP21237 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
BdnfP21237 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
BdnfP21237 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
BdnfP21237 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
BdnfP21237 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
BdnfP21237 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
BdnfP21237 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
BdnfP21237 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
BdnfP21237 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
BdnfP21237 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
BdnfP21237 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
BdnfP21237 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
BdnfP21237 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
BdnfP21237 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
BdnfP21237 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
BdnfP21237 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
BdnfP21237 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
BdnfP21237 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
BdnfP21237 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
BdnfP21237 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
BdnfP21237 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
BdnfP21237 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC21.87■■□□□ 1.09
BdnfP21237 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
BdnfP21237 Gm17641-201ENSMUST00000166328 2350 ntBASIC21.87■■□□□ 1.09
BdnfP21237 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC21.86■■□□□ 1.09
BdnfP21237 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
BdnfP21237 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
BdnfP21237 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
BdnfP21237 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
BdnfP21237 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC21.85■■□□□ 1.09
BdnfP21237 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
BdnfP21237 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
BdnfP21237 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
BdnfP21237 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
BdnfP21237 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC21.84■■□□□ 1.09
BdnfP21237 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
BdnfP21237 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
BdnfP21237 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
BdnfP21237 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.08
BdnfP21237 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.08
BdnfP21237 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.08
BdnfP21237 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
BdnfP21237 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC21.82■■□□□ 1.08
BdnfP21237 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC21.82■■□□□ 1.08
BdnfP21237 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
BdnfP21237 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
BdnfP21237 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC21.81■■□□□ 1.08
BdnfP21237 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
BdnfP21237 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
BdnfP21237 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
BdnfP21237 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
BdnfP21237 Gm42699-201ENSMUST00000198104 1657 ntBASIC21.79■■□□□ 1.08
BdnfP21237 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
BdnfP21237 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
BdnfP21237 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
BdnfP21237 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
BdnfP21237 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
BdnfP21237 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
BdnfP21237 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
BdnfP21237 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
BdnfP21237 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
BdnfP21237 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC21.77■■□□□ 1.08
BdnfP21237 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
BdnfP21237 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
BdnfP21237 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
BdnfP21237 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
BdnfP21237 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
BdnfP21237 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
BdnfP21237 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
BdnfP21237 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
BdnfP21237 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
BdnfP21237 Nkain2-201ENSMUST00000092602 558 ntBASIC21.75■■□□□ 1.07
BdnfP21237 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
BdnfP21237 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
BdnfP21237 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
BdnfP21237 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
BdnfP21237 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC21.75■■□□□ 1.07
BdnfP21237 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
BdnfP21237 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC21.74■■□□□ 1.07
BdnfP21237 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
BdnfP21237 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC21.73■■□□□ 1.07
BdnfP21237 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
BdnfP21237 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
BdnfP21237 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC21.73■■□□□ 1.07
BdnfP21237 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
BdnfP21237 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
BdnfP21237 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
BdnfP21237 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
BdnfP21237 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
BdnfP21237 Gm42809-201ENSMUST00000198429 1138 ntBASIC21.72■■□□□ 1.07
BdnfP21237 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
BdnfP21237 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
BdnfP21237 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Retrieved 100 of 76,532 protein–RNA pairs in 27.7 ms