Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Cdx1P18111 Gm43863-201ENSMUST00000203822 1192 ntBASIC18.28■□□□□ 0.52
Cdx1P18111 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Cdx1P18111 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Cdx1P18111 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Cdx1P18111 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Cdx1P18111 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Cdx1P18111 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Cdx1P18111 Gm9939-201ENSMUST00000067161 1154 ntBASIC18.27■□□□□ 0.52
Cdx1P18111 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Cdx1P18111 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
Cdx1P18111 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Cdx1P18111 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
Cdx1P18111 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
Cdx1P18111 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
Cdx1P18111 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Cdx1P18111 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Cdx1P18111 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Cdx1P18111 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Cdx1P18111 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Cdx1P18111 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Cdx1P18111 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Cdx1P18111 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
Cdx1P18111 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Cdx1P18111 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Cdx1P18111 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
Cdx1P18111 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Cdx1P18111 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Cdx1P18111 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Cdx1P18111 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
Cdx1P18111 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Cdx1P18111 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Cdx1P18111 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Cdx1P18111 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
Cdx1P18111 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Cdx1P18111 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Cdx1P18111 Gm8503-201ENSMUST00000118131 455 ntBASIC18.22■□□□□ 0.51
Cdx1P18111 Gm5987-201ENSMUST00000196433 1151 ntBASIC18.22■□□□□ 0.51
Cdx1P18111 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Cdx1P18111 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Cdx1P18111 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Cdx1P18111 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Cdx1P18111 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC18.21■□□□□ 0.51
Cdx1P18111 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Cdx1P18111 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Cdx1P18111 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
Cdx1P18111 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Cdx1P18111 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Cdx1P18111 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Cdx1P18111 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
Cdx1P18111 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC18.2■□□□□ 0.5
Cdx1P18111 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC18.2■□□□□ 0.5
Cdx1P18111 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Cdx1P18111 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Cdx1P18111 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC18.19■□□□□ 0.5
Cdx1P18111 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
Cdx1P18111 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Cdx1P18111 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Cdx1P18111 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Cdx1P18111 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
Cdx1P18111 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdx1P18111 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdx1P18111 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Cdx1P18111 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdx1P18111 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdx1P18111 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Cdx1P18111 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdx1P18111 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Cdx1P18111 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdx1P18111 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Cdx1P18111 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdx1P18111 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdx1P18111 Dmtn-209ENSMUST00000228295 2572 ntBASIC18.16■□□□□ 0.5
Cdx1P18111 AC157572.2-201ENSMUST00000226970 908 ntBASIC18.16■□□□□ 0.5
Cdx1P18111 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC18.16■□□□□ 0.5
Cdx1P18111 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Cdx1P18111 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdx1P18111 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Cdx1P18111 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdx1P18111 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdx1P18111 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cdx1P18111 Gm6821-201ENSMUST00000107540 542 ntBASIC18.15■□□□□ 0.5
Cdx1P18111 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Cdx1P18111 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Cdx1P18111 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.5
Cdx1P18111 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC18.14■□□□□ 0.5
Cdx1P18111 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cdx1P18111 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Cdx1P18111 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cdx1P18111 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Cdx1P18111 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cdx1P18111 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Cdx1P18111 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cdx1P18111 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cdx1P18111 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Cdx1P18111 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC18.13■□□□□ 0.49
Cdx1P18111 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Cdx1P18111 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cdx1P18111 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cdx1P18111 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 18 ms