RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 PNPLA2Q96AD5 504 aa17.78■□□□□ 0.44
CLN3-241ENST00000635861 NACC2Q96BF6 587 aa17.78■□□□□ 0.44
CLN3-241ENST00000635861 SLC22A18Q96BI1 424 aa17.78■□□□□ 0.44
CLN3-241ENST00000635861 KLHL25Q9H0H3 589 aa17.78■□□□□ 0.44
CLN3-241ENST00000635861 FAM60AQ9NP50 221 aa17.78■□□□□ 0.44
CLN3-241ENST00000635861 PACSIN2Q9UNF0 486 aaPredicted RBP17.78■□□□□ 0.44
CLN3-241ENST00000635861 R3HDM2Q9Y2K5 976 aaKnown RBP17.78■□□□□ 0.44
CLN3-241ENST00000635861 ZKSCAN5Q9Y2L8 839 aa17.78■□□□□ 0.44
CLN3-241ENST00000635861 PCSK5Q92824 1860 aa17.77■□□□□ 0.44
CLN3-241ENST00000635861 TEX15Q9BXT5 2789 aa17.77■□□□□ 0.44
CLN3-241ENST00000635861 CCDC162PA2VCL2 907 aa17.77■□□□□ 0.44
CLN3-241ENST00000635861 BHMG1C9JSJ3 638 aaPredicted RBP17.77■□□□□ 0.44
CLN3-241ENST00000635861 ZSCAN9O15535 394 aaPredicted RBP17.77■□□□□ 0.44
CLN3-241ENST00000635861 KLF7O75840 302 aaPredicted RBP17.77■□□□□ 0.44
CLN3-241ENST00000635861 ADRA1DP25100 572 aa17.77■□□□□ 0.44
CLN3-241ENST00000635861 DCDP81605 110 aaKnown RBP17.77■□□□□ 0.44
CLN3-241ENST00000635861 TSTD2Q5T7W7 516 aa17.77■□□□□ 0.44
CLN3-241ENST00000635861 FHL5Q5TD97 284 aa17.77■□□□□ 0.44
CLN3-241ENST00000635861 JMJD6Q6NYC1 403 aaPredicted RBP17.77■□□□□ 0.44
CLN3-241ENST00000635861 SLC22A15Q8IZD6 547 aa17.77■□□□□ 0.44
CLN3-241ENST00000635861 RNF10Q8N5U6 811 aaKnown RBP17.77■□□□□ 0.44
CLN3-241ENST00000635861 GBP5Q96PP8 586 aa17.77■□□□□ 0.44
CLN3-241ENST00000635861 NRTNQ99748 197 aa17.77■□□□□ 0.44
CLN3-241ENST00000635861 NUDT9Q9BW91 350 aa17.77■□□□□ 0.44
CLN3-241ENST00000635861 SLC29A3Q9BZD2 475 aa17.77■□□□□ 0.44
CLN3-241ENST00000635861 LRRC4CQ9HCJ2 640 aa17.77■□□□□ 0.44
CLN3-241ENST00000635861 TXLNGQ9NUQ3 528 aa17.77■□□□□ 0.44
CLN3-241ENST00000635861 NDOR1Q9UHB4 597 aa17.77■□□□□ 0.44
CLN3-241ENST00000635861 PLCL2Q9UPR0 1127 aa17.77■□□□□ 0.44
CLN3-241ENST00000635861 TDRKHQ9Y2W6 561 aaKnown RBP17.77■□□□□ 0.44
CLN3-241ENST00000635861 ZNF185O15231 689 aa17.76■□□□□ 0.43
CLN3-241ENST00000635861 FOLR3P41439 243 aa17.76■□□□□ 0.43
CLN3-241ENST00000635861 RAB28P51157 221 aa17.76■□□□□ 0.43
CLN3-241ENST00000635861 ATP1A4Q13733 1029 aa17.76■□□□□ 0.43
CLN3-241ENST00000635861 OASLQ15646 514 aaKnown RBP17.76■□□□□ 0.43
CLN3-241ENST00000635861 AARS2Q5JTZ9 985 aaKnown RBP17.76■□□□□ 0.43
CLN3-241ENST00000635861 SEL1L2Q5TEA6 688 aa17.76■□□□□ 0.43
CLN3-241ENST00000635861 VWA5B1Q5TIE3 1220 aa17.76■□□□□ 0.43
CLN3-241ENST00000635861 PPP1R21Q6ZMI0 780 aa17.76■□□□□ 0.43
CLN3-241ENST00000635861 MRGPREQ86SM8 312 aa17.76■□□□□ 0.43
CLN3-241ENST00000635861 TMEM139Q8IV31 216 aa17.76■□□□□ 0.43
CLN3-241ENST00000635861 SPC24Q8NBT2 197 aa17.76■□□□□ 0.43
CLN3-241ENST00000635861 OR4L1Q8NH43 312 aa17.76■□□□□ 0.43
CLN3-241ENST00000635861 ASZ1Q8WWH4 475 aa17.76■□□□□ 0.43
CLN3-241ENST00000635861 DLG3Q92796 817 aa17.76■□□□□ 0.43
CLN3-241ENST00000635861 HDAC10Q969S8 669 aa17.76■□□□□ 0.43
CLN3-241ENST00000635861 CARD6Q9BX69 1037 aa17.76■□□□□ 0.43
CLN3-241ENST00000635861 SLAMF7Q9NQ25 335 aa17.76■□□□□ 0.43
CLN3-241ENST00000635861 CUEDC1Q9NWM3 386 aaPredicted RBP17.76■□□□□ 0.43
CLN3-241ENST00000635861 PIH1D1Q9NWS0 290 aaKnown RBP17.76■□□□□ 0.43
CLN3-241ENST00000635861 SPHK1Q9NYA1 384 aa17.76■□□□□ 0.43
CLN3-241ENST00000635861 NBPF19A0A087WUL8 3843 aa17.75■□□□□ 0.43
CLN3-241ENST00000635861 OR51F1A6NGY5 319 aa17.75■□□□□ 0.43
CLN3-241ENST00000635861 E7EVH7 732 aa17.75■□□□□ 0.43
CLN3-241ENST00000635861 LIASO43766 372 aa17.75■□□□□ 0.43
CLN3-241ENST00000635861 IPO13O94829 963 aaKnown RBP17.75■□□□□ 0.43
CLN3-241ENST00000635861 FKBP9O95302 570 aa17.75■□□□□ 0.43
CLN3-241ENST00000635861 FTCDO95954 541 aa17.75■□□□□ 0.43
CLN3-241ENST00000635861 GOT2P00505 430 aaKnown RBP17.75■□□□□ 0.43
CLN3-241ENST00000635861 TPBGLP0DKB5 382 aa17.75■□□□□ 0.43
CLN3-241ENST00000635861 CBSLP0DN79 551 aa17.75■□□□□ 0.43
CLN3-241ENST00000635861 PKLRP30613 574 aa17.75■□□□□ 0.43
CLN3-241ENST00000635861 CBSP35520 551 aa17.75■□□□□ 0.43
CLN3-241ENST00000635861 BRD3Q15059 726 aa17.75■□□□□ 0.43
CLN3-241ENST00000635861 INPP5JQ15735 1006 aaPredicted RBP17.75■□□□□ 0.43
CLN3-241ENST00000635861 ZIC1Q15915 447 aa17.75■□□□□ 0.43
CLN3-241ENST00000635861 KYNUQ16719 465 aa17.75■□□□□ 0.43
CLN3-241ENST00000635861 CCDC38Q502W7 563 aa17.75■□□□□ 0.43
CLN3-241ENST00000635861 FASTKD1Q53R41 847 aaKnown RBP17.75■□□□□ 0.43
CLN3-241ENST00000635861 UNC5DQ6UXZ4 953 aa17.75■□□□□ 0.43
CLN3-241ENST00000635861 TRIM73Q86UV7 250 aa17.75■□□□□ 0.43
CLN3-241ENST00000635861 DNAJC22Q8N4W6 341 aa17.75■□□□□ 0.43
CLN3-241ENST00000635861 CLEC1AQ8NC01 280 aa17.75■□□□□ 0.43
CLN3-241ENST00000635861 OR2Y1Q8NGV0 311 aa17.75■□□□□ 0.43
CLN3-241ENST00000635861 NDC1Q9BTX1 674 aa17.75■□□□□ 0.43
CLN3-241ENST00000635861 ETNK1Q9HBU6 452 aa17.75■□□□□ 0.43
CLN3-241ENST00000635861 INTS7Q9NVH2 962 aaKnown RBP17.75■□□□□ 0.43
CLN3-241ENST00000635861 IFT80Q9P2H3 777 aaPredicted RBP17.75■□□□□ 0.43
CLN3-241ENST00000635861 MRFAP1Q9Y605 127 aa17.75■□□□□ 0.43
CLN3-241ENST00000635861 UNC79Q9P2D8 2635 aa17.75■□□□□ 0.43
CLN3-241ENST00000635861 TCRBV7S2A1N4TA0A589 114 aa17.74■□□□□ 0.43
CLN3-241ENST00000635861 BLACEA4D250 179 aa17.74■□□□□ 0.43
CLN3-241ENST00000635861 ISM1B1AKI9 464 aa17.74■□□□□ 0.43
CLN3-241ENST00000635861 PEX12O00623 359 aa17.74■□□□□ 0.43
CLN3-241ENST00000635861 GPC4O75487 556 aa17.74■□□□□ 0.43
CLN3-241ENST00000635861 AGFG2O95081 481 aa17.74■□□□□ 0.43
CLN3-241ENST00000635861 S1PR4O95977 384 aa17.74■□□□□ 0.43
CLN3-241ENST00000635861 ALPPP05187 535 aa17.74■□□□□ 0.43
CLN3-241ENST00000635861 GNLYP22749 145 aa17.74■□□□□ 0.43
CLN3-241ENST00000635861 OTX2P32243 289 aa17.74■□□□□ 0.43
CLN3-241ENST00000635861 UQCRFS1P47985 274 aa17.74■□□□□ 0.43
CLN3-241ENST00000635861 ARSFP54793 590 aa17.74■□□□□ 0.43
CLN3-241ENST00000635861 SOX8P57073 446 aa17.74■□□□□ 0.43
CLN3-241ENST00000635861 PRAMEP78395 509 aa17.74■□□□□ 0.43
CLN3-241ENST00000635861 DCAF10Q5QP82 559 aa17.74■□□□□ 0.43
CLN3-241ENST00000635861 YOD1Q5VVQ6 348 aaPredicted RBP17.74■□□□□ 0.43
CLN3-241ENST00000635861 MLIPQ5VWP3 458 aa17.74■□□□□ 0.43
CLN3-241ENST00000635861 SLC6A19Q695T7 634 aa17.74■□□□□ 0.43
CLN3-241ENST00000635861 MRPL14Q6P1L8 145 aaKnown RBP17.74■□□□□ 0.43
CLN3-241ENST00000635861 DCUN1D3Q8IWE4 304 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms