RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 ACTR10Q9NZ32 417 aa20.07■□□□□ 0.8
CLN3-240ENST00000631023 PLAGL1Q9UM63 463 aa20.07■□□□□ 0.8
CLN3-240ENST00000631023 NFS1Q9Y697 457 aa20.07■□□□□ 0.8
CLN3-240ENST00000631023 EIF3FO00303 357 aaPredicted RBP20.06■□□□□ 0.8
CLN3-240ENST00000631023 CHRM5P08912 532 aaPredicted RBP20.06■□□□□ 0.8
CLN3-240ENST00000631023 TPBGLP0DKB5 382 aa20.06■□□□□ 0.8
CLN3-240ENST00000631023 SSTR1P30872 391 aa20.06■□□□□ 0.8
CLN3-240ENST00000631023 MAGEA4P43358 317 aa20.06■□□□□ 0.8
CLN3-240ENST00000631023 ILF2Q12905 390 aaKnown RBP20.06■□□□□ 0.8
CLN3-240ENST00000631023 CUL1Q13616 776 aa20.06■□□□□ 0.8
CLN3-240ENST00000631023 IL11RAQ14626 422 aa20.06■□□□□ 0.8
CLN3-240ENST00000631023 ANKS6Q68DC2 871 aa20.06■□□□□ 0.8
CLN3-240ENST00000631023 LRRC8EQ6NSJ5 796 aa20.06■□□□□ 0.8
CLN3-240ENST00000631023 CYS1Q717R9 158 aa20.06■□□□□ 0.8
CLN3-240ENST00000631023 CD200R1Q8TD46 325 aa20.06■□□□□ 0.8
CLN3-240ENST00000631023 NAF1Q96HR8 494 aaKnown RBP20.06■□□□□ 0.8
CLN3-240ENST00000631023 SLC30A3Q99726 388 aa20.06■□□□□ 0.8
CLN3-240ENST00000631023 SIDT1Q9NXL6 827 aaKnown RBP20.06■□□□□ 0.8
CLN3-240ENST00000631023 SLC17A6Q9P2U8 582 aa20.06■□□□□ 0.8
CLN3-240ENST00000631023 MTRF1LQ9UGC7 380 aaKnown RBP20.06■□□□□ 0.8
CLN3-240ENST00000631023 TSR3Q9UJK0 312 aaKnown RBP20.06■□□□□ 0.8
CLN3-240ENST00000631023 B3GALT1Q9Y5Z6 326 aa20.06■□□□□ 0.8
CLN3-240ENST00000631023 PKD1L2Q7Z442 2459 aa20.06■□□□□ 0.8
CLN3-240ENST00000631023 SEC16AO15027 2179 aa20.05■□□□□ 0.8
CLN3-240ENST00000631023 ZZEF1O43149 2961 aa20.05■□□□□ 0.8
CLN3-240ENST00000631023 CATP04040 527 aaKnown RBP20.05■□□□□ 0.8
CLN3-240ENST00000631023 MPC1LP0DKB6 136 aa20.05■□□□□ 0.8
CLN3-240ENST00000631023 CD9P21926 228 aa20.05■□□□□ 0.8
CLN3-240ENST00000631023 RGS4P49798 205 aa20.05■□□□□ 0.8
CLN3-240ENST00000631023 KIR2DS3Q14952 304 aa20.05■□□□□ 0.8
CLN3-240ENST00000631023 TMTC4Q5T4D3 741 aa20.05■□□□□ 0.8
CLN3-240ENST00000631023 STRA8Q7Z7C7 330 aa20.05■□□□□ 0.8
CLN3-240ENST00000631023 GPATCH11Q8N954 259 aa20.05■□□□□ 0.8
CLN3-240ENST00000631023 GIMAP7Q8NHV1 300 aa20.05■□□□□ 0.8
CLN3-240ENST00000631023 SLC22A18Q96BI1 424 aa20.05■□□□□ 0.8
CLN3-240ENST00000631023 OR6C1Q96RD1 312 aa20.05■□□□□ 0.8
CLN3-240ENST00000631023 NRTNQ99748 197 aa20.05■□□□□ 0.8
CLN3-240ENST00000631023 TSPYL1Q9H0U9 437 aa20.05■□□□□ 0.8
CLN3-240ENST00000631023 ZDHHC18Q9NUE0 388 aa20.05■□□□□ 0.8
CLN3-240ENST00000631023 FOXJ2Q9P0K8 574 aa20.05■□□□□ 0.8
CLN3-240ENST00000631023 DMGDHQ9UI17 866 aaKnown RBP20.05■□□□□ 0.8
CLN3-240ENST00000631023 RUVBL2Q9Y230 463 aaKnown RBP20.05■□□□□ 0.8
CLN3-240ENST00000631023 VWA7Q9Y334 891 aa20.05■□□□□ 0.8
CLN3-240ENST00000631023 RASGRF2O14827 1237 aa20.04■□□□□ 0.8
CLN3-240ENST00000631023 PKLRP30613 574 aa20.04■□□□□ 0.8
CLN3-240ENST00000631023 SH3BP2P78314 561 aa20.04■□□□□ 0.8
CLN3-240ENST00000631023 ACY1Q03154 408 aa20.04■□□□□ 0.8
CLN3-240ENST00000631023 FAM45BPQ6NSW5 357 aa20.04■□□□□ 0.8
CLN3-240ENST00000631023 SPESP1Q6UW49 350 aa20.04■□□□□ 0.8
CLN3-240ENST00000631023 FAM45AQ8TCE6 357 aa20.04■□□□□ 0.8
CLN3-240ENST00000631023 CTRCQ99895 268 aa20.04■□□□□ 0.8
CLN3-240ENST00000631023 PDE7BQ9NP56 450 aa20.04■□□□□ 0.8
CLN3-240ENST00000631023 SOHLH2Q9NX45 425 aa20.04■□□□□ 0.8
CLN3-240ENST00000631023 LNPEPQ9UIQ6 1025 aa20.04■□□□□ 0.8
CLN3-240ENST00000631023 PTPRQQ9UMZ3 2332 aa20.04■□□□□ 0.8
CLN3-240ENST00000631023 DSPP15924 2871 aaKnown RBP20.04■□□□□ 0.8
CLN3-240ENST00000631023 HEATR5BQ9P2D3 2071 aa20.04■□□□□ 0.8
CLN3-240ENST00000631023 SLC9B1P1A6NJY1 282 aa20.04■□□□□ 0.8
CLN3-240ENST00000631023 ISM1B1AKI9 464 aa20.04■□□□□ 0.8
CLN3-240ENST00000631023 STMND1H3BQB6 276 aa20.04■□□□□ 0.8
CLN3-240ENST00000631023 KLK10O43240 276 aa20.04■□□□□ 0.8
CLN3-240ENST00000631023 PSIP1O75475 530 aaKnown RBP20.04■□□□□ 0.8
CLN3-240ENST00000631023 SPAG6O75602 509 aa20.04■□□□□ 0.8
CLN3-240ENST00000631023 MCM3P25205 808 aa20.04■□□□□ 0.8
CLN3-240ENST00000631023 ABCG1P45844 678 aa20.04■□□□□ 0.8
CLN3-240ENST00000631023 BDKRB1P46663 353 aa20.04■□□□□ 0.8
CLN3-240ENST00000631023 GRB7Q14451 532 aa20.04■□□□□ 0.8
CLN3-240ENST00000631023 RBM20Q5T481 1227 aaKnown RBP20.04■□□□□ 0.8
CLN3-240ENST00000631023 BPHLQ86WA6 291 aaPredicted RBP20.04■□□□□ 0.8
CLN3-240ENST00000631023 CPNE9Q8IYJ1 553 aa20.04■□□□□ 0.8
CLN3-240ENST00000631023 D2HGDHQ8N465 521 aa20.04■□□□□ 0.8
CLN3-240ENST00000631023 OR2L8Q8NGY9 312 aa20.04■□□□□ 0.8
CLN3-240ENST00000631023 IFT81Q8WYA0 676 aa20.04■□□□□ 0.8
CLN3-240ENST00000631023 PMEPA1Q969W9 287 aa20.04■□□□□ 0.8
CLN3-240ENST00000631023 MENTQ9BUN1 341 aa20.04■□□□□ 0.8
CLN3-240ENST00000631023 PITPNM3Q9BZ71 974 aa20.04■□□□□ 0.8
CLN3-240ENST00000631023 APMAPQ9HDC9 416 aa20.04■□□□□ 0.8
CLN3-240ENST00000631023 TXNDC16Q9P2K2 825 aa20.04■□□□□ 0.8
CLN3-240ENST00000631023 CIDEBQ9UHD4 219 aa20.04■□□□□ 0.8
CLN3-240ENST00000631023 BTRCQ9Y297 605 aa20.04■□□□□ 0.8
CLN3-240ENST00000631023 TCRBV9S1A1TA0A576 114 aa20.03■□□□□ 0.8
CLN3-240ENST00000631023 IQCJ-SCHIP1C9J366 451 aaPredicted RBP20.03■□□□□ 0.8
CLN3-240ENST00000631023 LIPCP11150 499 aa20.03■□□□□ 0.8
CLN3-240ENST00000631023 UGT2B7P16662 529 aa20.03■□□□□ 0.8
CLN3-240ENST00000631023 MAP4P27816 1152 aaKnown RBP20.03■□□□□ 0.8
CLN3-240ENST00000631023 CDKN2DP55273 166 aa20.03■□□□□ 0.8
CLN3-240ENST00000631023 PDAP1Q13442 181 aaKnown RBP20.03■□□□□ 0.8
CLN3-240ENST00000631023 HECTD2Q5U5R9 776 aa20.03■□□□□ 0.8
CLN3-240ENST00000631023 BROXQ5VW32 411 aa20.03■□□□□ 0.8
CLN3-240ENST00000631023 ZFAND4Q86XD8 727 aa20.03■□□□□ 0.8
CLN3-240ENST00000631023 SPACA3Q8IXA5 215 aa20.03■□□□□ 0.8
CLN3-240ENST00000631023 PPM1MQ96MI6 270 aa20.03■□□□□ 0.8
CLN3-240ENST00000631023 OR2A14Q96R47 310 aa20.03■□□□□ 0.8
CLN3-240ENST00000631023 SPHK1Q9NYA1 384 aa20.03■□□□□ 0.8
CLN3-240ENST00000631023 PSAT1Q9Y617 370 aa20.03■□□□□ 0.8
CLN3-240ENST00000631023 KMT2BQ9UMN6 2715 aaPredicted RBP20.03■□□□□ 0.8
CLN3-240ENST00000631023 ZBTB14O43829 449 aa20.02■□□□□ 0.8
CLN3-240ENST00000631023 FOLR1P15328 257 aa20.02■□□□□ 0.8
CLN3-240ENST00000631023 TIAL1Q01085 375 aaKnown RBP eCLIP20.02■□□□□ 0.8
CLN3-240ENST00000631023 TUBB3Q13509 450 aa20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms