RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 LETMD1Q6P1Q0 360 aa15.34■□□□□ 0.05
CPSF1-213ENST00000620219 C17orf64Q86WR6 236 aa15.34■□□□□ 0.05
CPSF1-213ENST00000620219 CCDC177Q9NQR7 707 aaPredicted RBP15.34■□□□□ 0.05
CPSF1-213ENST00000620219 THAP10Q9P2Z0 257 aaPredicted RBP15.34■□□□□ 0.05
CPSF1-213ENST00000620219 SOBPA7XYQ1 873 aa15.34■□□□□ 0.05
CPSF1-213ENST00000620219 SLC16A8O95907 504 aa15.34■□□□□ 0.05
CPSF1-213ENST00000620219 GBAP04062 536 aa15.34■□□□□ 0.05
CPSF1-213ENST00000620219 COX7A2P14406 83 aa15.34■□□□□ 0.05
CPSF1-213ENST00000620219 MAP7Q14244 749 aa15.34■□□□□ 0.05
CPSF1-213ENST00000620219 UBE2Q1Q7Z7E8 422 aa15.34■□□□□ 0.05
CPSF1-213ENST00000620219 THOC6Q86W42 341 aaKnown RBP15.34■□□□□ 0.05
CPSF1-213ENST00000620219 SLC17A9Q9BYT1 436 aa15.34■□□□□ 0.05
CPSF1-213ENST00000620219 OARD1Q9Y530 152 aa15.34■□□□□ 0.05
CPSF1-213ENST00000620219 SNX13Q9Y5W8 968 aa15.34■□□□□ 0.05
CPSF1-213ENST00000620219 SLC28A1O00337 649 aa15.34■□□□□ 0.05
CPSF1-213ENST00000620219 ZNF195O14628 629 aa15.34■□□□□ 0.05
CPSF1-213ENST00000620219 EIF2S1P05198 315 aaKnown RBP15.34■□□□□ 0.05
CPSF1-213ENST00000620219 GNAZP19086 355 aa15.34■□□□□ 0.05
CPSF1-213ENST00000620219 UFM1P61960 85 aa15.34■□□□□ 0.05
CPSF1-213ENST00000620219 MAD2L1Q13257 205 aaPredicted RBP15.34■□□□□ 0.05
CPSF1-213ENST00000620219 LPCAT4Q643R3 524 aa15.34■□□□□ 0.05
CPSF1-213ENST00000620219 TCAIMQ8N3R3 496 aa15.34■□□□□ 0.05
CPSF1-213ENST00000620219 LIX1Q8N485 282 aa15.34■□□□□ 0.05
CPSF1-213ENST00000620219 PLA2G15Q8NCC3 412 aa15.34■□□□□ 0.05
CPSF1-213ENST00000620219 TMIEQ8NEW7 156 aa15.34■□□□□ 0.05
CPSF1-213ENST00000620219 OR2T3Q8NH03 318 aa15.34■□□□□ 0.05
CPSF1-213ENST00000620219 RAB7BQ96AH8 199 aa15.34■□□□□ 0.05
CPSF1-213ENST00000620219 MAGED4Q96JG8 741 aa15.34■□□□□ 0.05
CPSF1-213ENST00000620219 SEMA6AQ9H2E6 1030 aa15.34■□□□□ 0.05
CPSF1-213ENST00000620219 VCX3BQ9H321 246 aa15.34■□□□□ 0.05
CPSF1-213ENST00000620219 DPEP2Q9H4A9 486 aa15.34■□□□□ 0.05
CPSF1-213ENST00000620219 COPS7BQ9H9Q2 264 aaPredicted RBP15.34■□□□□ 0.05
CPSF1-213ENST00000620219 FARSBQ9NSD9 589 aaKnown RBP15.34■□□□□ 0.05
CPSF1-213ENST00000620219 GSAPA4D1B5 854 aa15.33■□□□□ 0.05
CPSF1-213ENST00000620219 CBSLP0DN79 551 aa15.33■□□□□ 0.05
CPSF1-213ENST00000620219 MTHFD2P13995 350 aa15.33■□□□□ 0.05
CPSF1-213ENST00000620219 XRCC1P18887 633 aaPredicted RBP15.33■□□□□ 0.05
CPSF1-213ENST00000620219 RPS3P23396 243 aaKnown RBP eCLIP15.33■□□□□ 0.055e-7■□□□□ 10.5
CPSF1-213ENST00000620219 MAPK1P28482 360 aa15.33■□□□□ 0.05
CPSF1-213ENST00000620219 CBSP35520 551 aa15.33■□□□□ 0.05
CPSF1-213ENST00000620219 PLEKHS1Q5SXH7 462 aa15.33■□□□□ 0.05
CPSF1-213ENST00000620219 RALGPS2Q86X27 583 aaPredicted RBP15.33■□□□□ 0.05
CPSF1-213ENST00000620219 PRPF18Q99633 342 aaKnown RBP15.33■□□□□ 0.05
CPSF1-213ENST00000620219 TRIM15Q9C019 465 aa15.33■□□□□ 0.05
CPSF1-213ENST00000620219 MKRN2Q9H000 416 aaKnown RBP15.33■□□□□ 0.05
CPSF1-213ENST00000620219 ZBTB26Q9HCK0 441 aa15.33■□□□□ 0.05
CPSF1-213ENST00000620219 MIEF1Q9NQG6 463 aa15.33■□□□□ 0.05
CPSF1-213ENST00000620219 CLCA2Q9UQC9 943 aa15.33■□□□□ 0.05
CPSF1-213ENST00000620219 FRMPD3Q5JV73 1810 aa15.33■□□□□ 0.05
CPSF1-213ENST00000620219 HK3P52790 923 aa15.33■□□□□ 0.04
CPSF1-213ENST00000620219 ADAM15Q13444 863 aa15.33■□□□□ 0.04
CPSF1-213ENST00000620219 SPDYE7PQ495Y7 208 aa15.33■□□□□ 0.04
CPSF1-213ENST00000620219 PAGE2BQ5JRK9 111 aa15.33■□□□□ 0.04
CPSF1-213ENST00000620219 DUS1LQ6P1R4 473 aaKnown RBP15.33■□□□□ 0.04
CPSF1-213ENST00000620219 NET1Q7Z628 596 aaPredicted RBP15.33■□□□□ 0.04
CPSF1-213ENST00000620219 GALNT7Q86SF2 657 aa15.33■□□□□ 0.04
CPSF1-213ENST00000620219 FBXW8Q8N3Y1 598 aa15.33■□□□□ 0.04
CPSF1-213ENST00000620219 MCCC1Q96RQ3 725 aaPredicted RBP15.33■□□□□ 0.04
CPSF1-213ENST00000620219 KCNK12Q9HB15 430 aa15.33■□□□□ 0.04
CPSF1-213ENST00000620219 NMRK1Q9NWW6 199 aa15.33■□□□□ 0.04
CPSF1-213ENST00000620219 EVPLLA8MZ36 301 aa15.33■□□□□ 0.04
CPSF1-213ENST00000620219 TGFB1P01137 390 aa15.33■□□□□ 0.04
CPSF1-213ENST00000620219 POLR2JP52435 117 aaKnown RBP15.33■□□□□ 0.04
CPSF1-213ENST00000620219 RPS21P63220 83 aaKnown RBP15.33■□□□□ 0.04
CPSF1-213ENST00000620219 CBLBQ13191 982 aa15.33■□□□□ 0.04
CPSF1-213ENST00000620219 ABRAXAS2Q15018 415 aa15.33■□□□□ 0.04
CPSF1-213ENST00000620219 REP15Q6BDI9 236 aa15.33■□□□□ 0.04
CPSF1-213ENST00000620219 ARMC6Q6NXE6 501 aa15.33■□□□□ 0.04
CPSF1-213ENST00000620219 VPS37AQ8NEZ2 397 aa15.33■□□□□ 0.04
CPSF1-213ENST00000620219 DNAJA2O60884 412 aa15.33■□□□□ 0.04
CPSF1-213ENST00000620219 UBTFL6P0CB48 400 aaPredicted RBP15.33■□□□□ 0.04
CPSF1-213ENST00000620219 ZNF8P17098 575 aaPredicted RBP15.33■□□□□ 0.04
CPSF1-213ENST00000620219 AP1S2P56377 157 aa15.33■□□□□ 0.04
CPSF1-213ENST00000620219 ARMCX6Q7L4S7 300 aa15.33■□□□□ 0.04
CPSF1-213ENST00000620219 FIG4Q92562 907 aa15.33■□□□□ 0.04
CPSF1-213ENST00000620219 L3HYPDHQ96EM0 354 aa15.33■□□□□ 0.04
CPSF1-213ENST00000620219 OR52E6Q96RD3 313 aa15.33■□□□□ 0.04
CPSF1-213ENST00000620219 KCTD14Q9BQ13 255 aaPredicted RBP15.33■□□□□ 0.04
CPSF1-213ENST00000620219 SNX8Q9Y5X2 465 aa15.33■□□□□ 0.04
CPSF1-213ENST00000620219 PIKFYVEQ9Y2I7 2098 aa15.33■□□□□ 0.04
CPSF1-213ENST00000620219 E2F6O75461 281 aa15.32■□□□□ 0.04
CPSF1-213ENST00000620219 G6PDP11413 515 aa15.32■□□□□ 0.04
CPSF1-213ENST00000620219 ANPEPP15144 967 aa15.32■□□□□ 0.04
CPSF1-213ENST00000620219 EOGTQ5NDL2 527 aa15.32■□□□□ 0.04
CPSF1-213ENST00000620219 EME1Q96AY2 570 aa15.32■□□□□ 0.04
CPSF1-213ENST00000620219 ELSPBP1Q96BH3 223 aa15.32■□□□□ 0.04
CPSF1-213ENST00000620219 P2RY12Q9H244 342 aa15.32■□□□□ 0.04
CPSF1-213ENST00000620219 TAC3Q9UHF0 121 aa15.32■□□□□ 0.04
CPSF1-213ENST00000620219 NCOR1O75376 2440 aa15.32■□□□□ 0.04
CPSF1-213ENST00000620219 A0A088AWK7 358 aa15.32■□□□□ 0.04
CPSF1-213ENST00000620219 CCDC160A6NGH7 325 aa15.32■□□□□ 0.04
CPSF1-213ENST00000620219 AP2A2O94973 939 aa15.32■□□□□ 0.04
CPSF1-213ENST00000620219 PTGR1Q14914 329 aa15.32■□□□□ 0.04
CPSF1-213ENST00000620219 CYP51A1Q16850 503 aa15.32■□□□□ 0.04
CPSF1-213ENST00000620219 PLD3Q8IV08 490 aa15.32■□□□□ 0.04
CPSF1-213ENST00000620219 CPSF7Q8N684 471 aaKnown RBP15.32■□□□□ 0.04
CPSF1-213ENST00000620219 TSACCQ96A04 125 aaPredicted RBP15.32■□□□□ 0.04
CPSF1-213ENST00000620219 FAM162AQ96A26 154 aa15.32■□□□□ 0.04
CPSF1-213ENST00000620219 RHBDF1Q96CC6 855 aa15.32■□□□□ 0.04
CPSF1-213ENST00000620219 ECHDC3Q96DC8 303 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms