RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 SEC24AO95486 1093 aa20.07■□□□□ 0.8
UPF1-207ENST00000599848 GP1BBP13224 206 aa20.07■□□□□ 0.8
UPF1-207ENST00000599848 EPHA3P29320 983 aa20.07■□□□□ 0.8
UPF1-207ENST00000599848 SLC11A1P49279 550 aa20.07■□□□□ 0.8
UPF1-207ENST00000599848 RPS14P62263 151 aaKnown RBP20.07■□□□□ 0.8
UPF1-207ENST00000599848 IRF5Q13568 498 aa20.07■□□□□ 0.8
UPF1-207ENST00000599848 MED22Q15528 200 aa20.07■□□□□ 0.8
UPF1-207ENST00000599848 CNTD1Q8N815 330 aa20.07■□□□□ 0.8
UPF1-207ENST00000599848 ZNF296Q8WUU4 475 aaPredicted RBP20.07■□□□□ 0.8
UPF1-207ENST00000599848 IGSF21Q96ID5 467 aa20.07■□□□□ 0.8
UPF1-207ENST00000599848 MGME1Q9BQP7 344 aa20.07■□□□□ 0.8
UPF1-207ENST00000599848 MS4A12Q9NXJ0 267 aa20.07■□□□□ 0.8
UPF1-207ENST00000599848 HEMK1Q9Y5R4 338 aaPredicted RBP20.07■□□□□ 0.8
UPF1-207ENST00000599848 OAS3Q9Y6K5 1087 aaKnown RBP20.07■□□□□ 0.8
UPF1-207ENST00000599848 AHSA1O95433 338 aa20.07■□□□□ 0.8
UPF1-207ENST00000599848 F2P00734 622 aa20.07■□□□□ 0.8
UPF1-207ENST00000599848 RPS3AP61247 264 aaKnown RBP20.07■□□□□ 0.8
UPF1-207ENST00000599848 SWI5Q1ZZU3 235 aa20.07■□□□□ 0.8
UPF1-207ENST00000599848 C22orf39Q6P5X5 142 aa20.07■□□□□ 0.8
UPF1-207ENST00000599848 TMEM234Q8WY98 164 aa20.07■□□□□ 0.8
UPF1-207ENST00000599848 ZNF641Q96N77 438 aaPredicted RBP20.07■□□□□ 0.8
UPF1-207ENST00000599848 MEMO1Q9Y316 297 aa20.07■□□□□ 0.8
UPF1-207ENST00000599848 NPIPA5E9PKD4 350 aa20.07■□□□□ 0.8
UPF1-207ENST00000599848 GRIA2P42262 883 aa20.07■□□□□ 0.8
UPF1-207ENST00000599848 STARP49675 285 aa20.07■□□□□ 0.8
UPF1-207ENST00000599848 GBE1Q04446 702 aa20.07■□□□□ 0.8
UPF1-207ENST00000599848 PPIDQ08752 370 aaKnown RBP20.07■□□□□ 0.8
UPF1-207ENST00000599848 GLYATQ6IB77 296 aa20.07■□□□□ 0.8
UPF1-207ENST00000599848 DENND5AQ6IQ26 1287 aa20.07■□□□□ 0.8
UPF1-207ENST00000599848 WDR92Q96MX6 357 aa20.07■□□□□ 0.8
UPF1-207ENST00000599848 NPIPA1Q9UND3 350 aa20.07■□□□□ 0.8
UPF1-207ENST00000599848 ACOT7O00154 380 aa20.06■□□□□ 0.8
UPF1-207ENST00000599848 PMM2O15305 246 aa20.06■□□□□ 0.8
UPF1-207ENST00000599848 KLF8O95600 359 aaPredicted RBP20.06■□□□□ 0.8
UPF1-207ENST00000599848 FCHO2Q0JRZ9 810 aa20.06■□□□□ 0.8
UPF1-207ENST00000599848 OR56A1Q8NGH5 318 aa20.06■□□□□ 0.8
UPF1-207ENST00000599848 MARK4Q96L34 752 aa20.06■□□□□ 0.8
UPF1-207ENST00000599848 SLC29A3Q9BZD2 475 aa20.06■□□□□ 0.8
UPF1-207ENST00000599848 SCML1Q9UN30 329 aa20.06■□□□□ 0.8
UPF1-207ENST00000599848 PCDH7O60245 1069 aa20.06■□□□□ 0.8
UPF1-207ENST00000599848 ATP6V1G2O95670 118 aa20.06■□□□□ 0.8
UPF1-207ENST00000599848 ZNF33AQ06730 810 aa20.06■□□□□ 0.8
UPF1-207ENST00000599848 PLEKHG4Q58EX7 1191 aa20.06■□□□□ 0.8
UPF1-207ENST00000599848 DDX59Q5T1V6 619 aaKnown RBP eCLIP20.06■□□□□ 0.89e-9■□□□□ 8.2
UPF1-207ENST00000599848 ALG1LQ6GMV1 187 aa20.06■□□□□ 0.8
UPF1-207ENST00000599848 IRF2BP2Q7Z5L9 587 aa20.06■□□□□ 0.8
UPF1-207ENST00000599848 SVOPLQ8N434 492 aa20.06■□□□□ 0.8
UPF1-207ENST00000599848 ANKLE1Q8NAG6 615 aa20.06■□□□□ 0.8
UPF1-207ENST00000599848 ROPN1LQ96C74 230 aa20.06■□□□□ 0.8
UPF1-207ENST00000599848 SCGB3A2Q96PL1 93 aa20.06■□□□□ 0.8
UPF1-207ENST00000599848 PAIP1Q9H074 479 aaKnown RBP20.06■□□□□ 0.8
UPF1-207ENST00000599848 DPEP3Q9H4B8 488 aa20.06■□□□□ 0.8
UPF1-207ENST00000599848 P2RX2Q9UBL9 471 aa20.06■□□□□ 0.8
UPF1-207ENST00000599848 ATP6AP2A0A1C7CYW4 349 aa20.06■□□□□ 0.8
UPF1-207ENST00000599848 ATP6AP2O75787 350 aa20.06■□□□□ 0.8
UPF1-207ENST00000599848 ZNF8P17098 575 aaPredicted RBP20.06■□□□□ 0.8
UPF1-207ENST00000599848 PRPS1L1P21108 318 aa20.06■□□□□ 0.8
UPF1-207ENST00000599848 KCNC3Q14003 757 aa20.06■□□□□ 0.8
UPF1-207ENST00000599848 KLHL22Q53GT1 634 aa20.06■□□□□ 0.8
UPF1-207ENST00000599848 TMEM17Q86X19 198 aa20.06■□□□□ 0.8
UPF1-207ENST00000599848 DUSP26Q9BV47 211 aa20.06■□□□□ 0.8
UPF1-207ENST00000599848 SMOC2Q9H3U7 446 aa20.06■□□□□ 0.8
UPF1-207ENST00000599848 CST3P01034 146 aaPredicted RBP20.06■□□□□ 0.8
UPF1-207ENST00000599848 ATP1B2P14415 290 aaPredicted RBP20.06■□□□□ 0.8
UPF1-207ENST00000599848 PFKLP17858 780 aa20.06■□□□□ 0.8
UPF1-207ENST00000599848 CCR10P46092 362 aa20.06■□□□□ 0.8
UPF1-207ENST00000599848 ARCN1P48444 511 aaKnown RBP20.06■□□□□ 0.8
UPF1-207ENST00000599848 C15orf40Q8WUR7 153 aa20.06■□□□□ 0.8
UPF1-207ENST00000599848 NARS2Q96I59 477 aaKnown RBP20.06■□□□□ 0.8
UPF1-207ENST00000599848 CHRAC1Q9NRG0 131 aa20.06■□□□□ 0.8
UPF1-207ENST00000599848 A0A1W2PRB8 838 aa20.06■□□□□ 0.8
UPF1-207ENST00000599848 KCNJ13O60928 360 aa20.06■□□□□ 0.8
UPF1-207ENST00000599848 POP7O75817 140 aaKnown RBP20.06■□□□□ 0.8
UPF1-207ENST00000599848 DNAJA1P31689 397 aaKnown RBP20.06■□□□□ 0.8
UPF1-207ENST00000599848 UBE2J2Q8N2K1 259 aa20.06■□□□□ 0.8
UPF1-207ENST00000599848 MEIOBQ8N635 442 aa20.06■□□□□ 0.8
UPF1-207ENST00000599848 CLHC1Q8NHS4 586 aa20.06■□□□□ 0.8
UPF1-207ENST00000599848 OR2M4Q96R27 311 aa20.06■□□□□ 0.8
UPF1-207ENST00000599848 ZNF879B4DU55 563 aa20.05■□□□□ 0.8
UPF1-207ENST00000599848 GSTM3P21266 225 aa20.05■□□□□ 0.8
UPF1-207ENST00000599848 CDKN2BP42772 138 aa20.05■□□□□ 0.8
UPF1-207ENST00000599848 C1GALT1C1Q96EU7 318 aa20.05■□□□□ 0.8
UPF1-207ENST00000599848 CEP295NLQ96MC4 621 aa20.05■□□□□ 0.8
UPF1-207ENST00000599848 GDAP2Q9NXN4 497 aa20.05■□□□□ 0.8
UPF1-207ENST00000599848 C11orf97A0A1B0GVM6 126 aaPredicted RBP20.05■□□□□ 0.8
UPF1-207ENST00000599848 ANXA2P2A6NMY6 339 aa20.05■□□□□ 0.8
UPF1-207ENST00000599848 LEFTY2O00292 366 aa20.05■□□□□ 0.8
UPF1-207ENST00000599848 MT-ND5P03915 603 aa20.05■□□□□ 0.8
UPF1-207ENST00000599848 ANXA2P07355 339 aaKnown RBP20.05■□□□□ 0.8
UPF1-207ENST00000599848 ACVR2AP27037 513 aa20.05■□□□□ 0.8
UPF1-207ENST00000599848 SYT16Q17RD7 645 aa20.05■□□□□ 0.8
UPF1-207ENST00000599848 COQ8BQ96D53 544 aa20.05■□□□□ 0.8
UPF1-207ENST00000599848 IFT27Q9BW83 186 aa20.05■□□□□ 0.8
UPF1-207ENST00000599848 LGR4Q9BXB1 951 aa20.05■□□□□ 0.8
UPF1-207ENST00000599848 BHLHE41Q9C0J9 482 aaPredicted RBP20.05■□□□□ 0.8
UPF1-207ENST00000599848 KCNH6Q9H252 994 aa20.05■□□□□ 0.8
UPF1-207ENST00000599848 ZCCHC3Q9NUD5 404 aaKnown RBP20.05■□□□□ 0.8
UPF1-207ENST00000599848 CNOT6Q9ULM6 557 aaKnown RBP20.05■□□□□ 0.8
UPF1-207ENST00000599848 MRC1P22897 1456 aa20.05■□□□□ 0.8
UPF1-207ENST00000599848 PSMA1P25786 263 aaKnown RBP20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms