RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 STMND1H3BQB6 276 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 H7C0C1 242 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 M0QZQ0 153 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 APOL1O14791 398 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 XPO1O14980 1071 aaKnown RBP4.08□□□□□ -1.76
LIG3-211ENST00000588713 MDM4O15151 490 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 HDAC3O15379 428 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 KCNN4O15554 427 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 HOXC11O43248 304 aaPredicted RBP4.08□□□□□ -1.76
LIG3-211ENST00000588713 AQP9O43315 295 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 AKAP10O43572 662 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 UGT1A9O60656 530 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 KLHL41O60662 606 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 RNASEH2AO75792 299 aaKnown RBP4.08□□□□□ -1.76
LIG3-211ENST00000588713 PIAS1O75925 651 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 DNAJB5O75953 348 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 SRP72O76094 671 aaKnown RBP4.08□□□□□ -1.76
LIG3-211ENST00000588713 ZBTB11O95625 1053 aaPredicted RBP4.08□□□□□ -1.76
LIG3-211ENST00000588713 TRUB2O95900 331 aaKnown RBP4.08□□□□□ -1.76
LIG3-211ENST00000588713 CALCAP01258 141 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 DNTTP04053 509 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 ERBB2P04626 1255 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 MBL2P11226 248 aaPredicted RBP4.08□□□□□ -1.76
LIG3-211ENST00000588713 EPXP11678 715 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 KRT3P12035 628 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 P4HA1P13674 534 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 ACANP16112 2415 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 JUNBP17275 347 aaPredicted RBP4.08□□□□□ -1.76
LIG3-211ENST00000588713 UGT1A6P19224 532 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 TNNI1P19237 187 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 UGT1A1P22309 533 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 UGT1A4P22310 534 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 IL1R2P27930 398 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 UGT1A3P35503 534 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 GNL1P36915 607 aaPredicted RBP4.08□□□□□ -1.76
LIG3-211ENST00000588713 HADHAP40939 763 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 NAMPTP43490 491 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 STT3AP46977 705 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 ATP5OP48047 213 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 DGKGP49619 791 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 EIF2B2P49770 351 aaKnown RBP4.08□□□□□ -1.76
LIG3-211ENST00000588713 LIMK2P53671 638 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 TMBIM6P55061 237 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 GABARAPL2P60520 117 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 PRKAA1Q13131 559 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 TUBA3CQ13748 450 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 CEACAM7Q14002 265 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 GK3PQ14409 553 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 SQLEQ14534 574 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 ZNF846Q147U1 533 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 NUMA1Q14980 2115 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 OXA1LQ15070 435 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 PDK1Q15118 436 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 SURF1Q15526 300 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 TRIP11Q15643 1979 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 DDR2Q16832 855 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 DCAF4L1Q3SXM0 396 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 POM121L1PQ3SYA9 428 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 CCDC14Q49A88 953 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 PTPN20Q4JDL3 420 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 SEZ6Q53EL9 994 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 XKR9Q5GH70 373 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 MTX3Q5HYI7 312 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 NHSL2Q5HYW2 709 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 AARS2Q5JTZ9 985 aaKnown RBP4.08□□□□□ -1.76
LIG3-211ENST00000588713 SPANXN3Q5MJ09 141 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 SAMD4BQ5PRF9 694 aaKnown RBP4.08□□□□□ -1.76
LIG3-211ENST00000588713 GRTP1Q5TC63 336 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 MROH9Q5TGP6 573 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 AGAP7PQ5VUJ5 663 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 SEL1L3Q68CR1 1132 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 SPOPLQ6IQ16 392 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 FAM45BPQ6NSW5 357 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 PPP4R4Q6NUP7 873 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 NEPROQ6NW34 567 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 PRMT9Q6P2P2 845 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 TRMT10BQ6PF06 316 aaKnown RBP4.08□□□□□ -1.76
LIG3-211ENST00000588713 C16orf87Q6PH81 154 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 NCEH1Q6PIU2 408 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 FIGNL1Q6PIW4 674 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 PAOXQ6QHF9 649 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 CLEC9AQ6UXN8 241 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 TPGS1Q6ZTW0 290 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 ZNF438Q7Z4V0 828 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 CD163Q86VB7 1156 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 TMEM25Q86YD3 366 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 C10orf107Q8IVU9 208 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 BRSK2Q8IWQ3 736 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 BBS7Q8IWZ6 715 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 GALNT4Q8N4A0 578 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 AFAP1L2Q8N4X5 818 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 ZNF781Q8N8C0 355 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 FAM47BQ8NA70 645 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 KCTD6Q8NC69 237 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 OR2T3Q8NH03 318 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 FAM45AQ8TCE6 357 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 RAB2BQ8WUD1 216 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 CHTF18Q8WVB6 975 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 ZNF606Q8WXB4 792 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 BSNDQ8WZ55 320 aa4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms