RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 FGL2Q14314 439 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 ZC3H12BQ5HYM0 836 aaKnown RBP10.62□□□□□ -0.71
CLK3-226ENST00000569406 ANGPTL8Q6UXH0 198 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 ADGRG3Q86Y34 549 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 OR6S1Q8NH40 331 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 SVIPQ8NHG7 77 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 ACTL9Q8TC94 416 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 MUL1Q969V5 352 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 TRMT61AQ96FX7 289 aaKnown RBP10.62□□□□□ -0.71
CLK3-226ENST00000569406 FDXACB1Q9BRP7 624 aaPredicted RBP10.62□□□□□ -0.71
CLK3-226ENST00000569406 FAM83DQ9H4H8 585 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 FAM96AQ9H5X1 160 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 PLAC1Q9HBJ0 212 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 UFSP2Q9NUQ7 469 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 THUMPD1Q9NXG2 353 aaKnown RBP10.62□□□□□ -0.71
CLK3-226ENST00000569406 MIOXQ9UGB7 285 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 RPS6KA6Q9UK32 745 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 DRG1Q9Y295 367 aaKnown RBP10.62□□□□□ -0.71
CLK3-226ENST00000569406 TCRBV9S1A1TA0A576 114 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 PCDHGA12O60330 932 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 C1QAP02745 245 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 CYP11A1P05108 521 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 ITGAVP06756 1048 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 CRHBPP24387 322 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 FGFBP1Q14512 234 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 SSX2Q16385 188 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 ARMCX4Q5H9R4 360 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 DHFR2Q86XF0 187 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 EMID1Q96A84 441 aaPredicted RBP10.62□□□□□ -0.71
CLK3-226ENST00000569406 ELMO2Q96JJ3 720 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 NODALQ96S42 347 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 RIBC2Q9H4K1 309 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 NMUR1Q9HB89 426 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 PAK6Q9NQU5 681 aaPredicted RBP10.62□□□□□ -0.71
CLK3-226ENST00000569406 RAB6BQ9NRW1 208 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 EXD2Q9NVH0 621 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 TNPO3Q9Y5L0 923 aaKnown RBP10.62□□□□□ -0.71
CLK3-226ENST00000569406 ARGFXA6NJG6 315 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 PGLSO95336 258 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 VTNP04004 478 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 ZNF286BP0CG31 522 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 PRG2P13727 222 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 DDX6P26196 483 aaKnown RBP eCLIP10.62□□□□□ -0.71
CLK3-226ENST00000569406 HOXA11P31270 313 aaPredicted RBP10.62□□□□□ -0.71
CLK3-226ENST00000569406 MFSD10Q14728 455 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 DPY19L1Q2PZI1 675 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 INTS11Q5TA45 600 aaKnown RBP10.62□□□□□ -0.71
CLK3-226ENST00000569406 TMEM198Q66K66 360 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 SMYD5Q6GMV2 418 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 TIGD7Q6NT04 549 aaPredicted RBP10.62□□□□□ -0.71
CLK3-226ENST00000569406 TEX261Q6UWH6 196 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 ZDHHC13Q8IUH4 622 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 C2orf69Q8N8R5 385 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 OR7G3Q8NG95 312 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 NARS2Q96I59 477 aaKnown RBP10.62□□□□□ -0.71
CLK3-226ENST00000569406 MMP27Q9H306 513 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 SMYD2Q9NRG4 433 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 SLC22A11Q9NSA0 550 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 PDE10AQ9Y233 779 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 FIS1Q9Y3D6 152 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 U3KQ87 197 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 SLC12A8A0AV02 714 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 TRABD2BA6NFA1 517 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 DBX1A6NMT0 343 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 PPEF2O14830 753 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 HBP1O60381 514 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 HSPA4LO95757 839 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 IL33O95760 270 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 FTH1P02794 183 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 JUNP05412 331 aaKnown RBP10.61□□□□□ -0.71
CLK3-226ENST00000569406 FSHRP23945 695 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 MYL9P24844 172 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 ARSDP51689 593 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 SMSP52788 366 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 PSPHP78330 225 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 MPP1Q00013 466 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 ERV3-1Q14264 604 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 MEP1AQ16819 746 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 PTCHD3Q3KNS1 767 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 LAMTOR1Q6IAA8 161 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 SH2D5Q6ZV89 423 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 SULF1Q8IWU6 871 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 AVL9Q8NBF6 648 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 HS6ST2Q96MM7 605 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 UCK1Q9HA47 277 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 VPS28Q9UK41 221 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 LIPT1Q9Y234 373 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 WRBO00258 174 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 SLC22A2O15244 555 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 ATG12O94817 140 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 P2RY4P51582 365 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 PER3P56645 1201 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 TNK1Q13470 666 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 PIGHQ14442 188 aaPredicted RBP10.61□□□□□ -0.71
CLK3-226ENST00000569406 GPRIN3Q6ZVF9 776 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 NLRP8Q86W28 1048 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 TMEM199Q8N511 208 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 C7orf31Q8N865 590 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 SRFBP1Q8NEF9 429 aaKnown RBP10.61□□□□□ -0.71
CLK3-226ENST00000569406 ZMIZ2Q8NF64 920 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms