RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 CD59P13987 128 aa16.11■□□□□ 0.17
VPS4A-202ENST00000562754 NR1D1P20393 614 aa16.11■□□□□ 0.17
VPS4A-202ENST00000562754 PKLRP30613 574 aa16.11■□□□□ 0.17
VPS4A-202ENST00000562754 SLC18A1P54219 525 aa16.11■□□□□ 0.17
VPS4A-202ENST00000562754 AP1S2P56377 157 aa16.11■□□□□ 0.17
VPS4A-202ENST00000562754 WDR4P57081 412 aaKnown RBP16.11■□□□□ 0.17
VPS4A-202ENST00000562754 PPP2R2AP63151 447 aa16.11■□□□□ 0.17
VPS4A-202ENST00000562754 KRT33BQ14525 404 aa16.11■□□□□ 0.17
VPS4A-202ENST00000562754 PCLAFQ15004 111 aa16.11■□□□□ 0.17
VPS4A-202ENST00000562754 ZXDCQ2QGD7 858 aaPredicted RBP16.11■□□□□ 0.17
VPS4A-202ENST00000562754 C18orf21Q32NC0 220 aaPredicted RBP16.11■□□□□ 0.17
VPS4A-202ENST00000562754 AASDHQ4L235 1098 aaPredicted RBP16.11■□□□□ 0.17
VPS4A-202ENST00000562754 DBX2Q6ZNG2 339 aa16.11■□□□□ 0.17
VPS4A-202ENST00000562754 ZNF761Q86XN6 746 aaPredicted RBP16.11■□□□□ 0.17
VPS4A-202ENST00000562754 PDPRQ8NCN5 879 aa16.11■□□□□ 0.17
VPS4A-202ENST00000562754 RAD51AP1Q96B01 352 aa16.11■□□□□ 0.17
VPS4A-202ENST00000562754 APOLD1Q96LR9 279 aa16.11■□□□□ 0.17
VPS4A-202ENST00000562754 TRIM54Q9BYV2 358 aa16.11■□□□□ 0.17
VPS4A-202ENST00000562754 MLXIPLQ9NP71 852 aa16.11■□□□□ 0.17
VPS4A-202ENST00000562754 ARL15Q9NXU5 204 aa16.11■□□□□ 0.17
VPS4A-202ENST00000562754 CD274Q9NZQ7 290 aa16.11■□□□□ 0.17
VPS4A-202ENST00000562754 STOX2Q9P2F5 926 aaPredicted RBP16.11■□□□□ 0.17
VPS4A-202ENST00000562754 POLG2Q9UHN1 485 aa16.11■□□□□ 0.17
VPS4A-202ENST00000562754 COLEC10Q9Y6Z7 277 aa16.11■□□□□ 0.17
VPS4A-202ENST00000562754 LAMA1P25391 3075 aa16.1■□□□□ 0.17
VPS4A-202ENST00000562754 SYCE1LA8MT33 242 aa16.1■□□□□ 0.17
VPS4A-202ENST00000562754 GDF9O60383 454 aa16.1■□□□□ 0.17
VPS4A-202ENST00000562754 SLC16A8O95907 504 aa16.1■□□□□ 0.17
VPS4A-202ENST00000562754 HIST1H2AGP0C0S8 130 aaPredicted RBP16.1■□□□□ 0.17
VPS4A-202ENST00000562754 ERGP11308 486 aa16.1■□□□□ 0.17
VPS4A-202ENST00000562754 HIST1H2ADP20671 130 aa16.1■□□□□ 0.17
VPS4A-202ENST00000562754 IMPA1P29218 277 aa16.1■□□□□ 0.17
VPS4A-202ENST00000562754 PROX2Q3B8N5 592 aa16.1■□□□□ 0.17
VPS4A-202ENST00000562754 FBXO48Q5FWF7 155 aa16.1■□□□□ 0.17
VPS4A-202ENST00000562754 TTC23LQ6PF05 361 aa16.1■□□□□ 0.17
VPS4A-202ENST00000562754 TMEM26Q6ZUK4 368 aa16.1■□□□□ 0.17
VPS4A-202ENST00000562754 PTGR2Q8N8N7 351 aaPredicted RBP16.1■□□□□ 0.17
VPS4A-202ENST00000562754 FAM181AQ8N9Y4 354 aa16.1■□□□□ 0.17
VPS4A-202ENST00000562754 CCDC63Q8NA47 563 aa16.1■□□□□ 0.17
VPS4A-202ENST00000562754 AVL9Q8NBF6 648 aa16.1■□□□□ 0.17
VPS4A-202ENST00000562754 MDM1Q8TC05 714 aa16.1■□□□□ 0.17
VPS4A-202ENST00000562754 RDH11Q8TC12 318 aa16.1■□□□□ 0.17
VPS4A-202ENST00000562754 MAGEC3Q8TD91 643 aa16.1■□□□□ 0.17
VPS4A-202ENST00000562754 MGARPQ8TDB4 240 aa16.1■□□□□ 0.17
VPS4A-202ENST00000562754 ZNF480Q8WV37 535 aa16.1■□□□□ 0.17
VPS4A-202ENST00000562754 RHBDF1Q96CC6 855 aa16.1■□□□□ 0.17
VPS4A-202ENST00000562754 FBXL8Q96CD0 374 aa16.1■□□□□ 0.17
VPS4A-202ENST00000562754 HIST1H2AHQ96KK5 128 aa16.1■□□□□ 0.17
VPS4A-202ENST00000562754 CCDC138Q96M89 665 aa16.1■□□□□ 0.17
VPS4A-202ENST00000562754 HIST1H2AJQ99878 128 aa16.1■□□□□ 0.17
VPS4A-202ENST00000562754 EGFL8Q99944 293 aa16.1■□□□□ 0.17
VPS4A-202ENST00000562754 TMEM79Q9BSE2 394 aa16.1■□□□□ 0.17
VPS4A-202ENST00000562754 H2AFJQ9BTM1 129 aa16.1■□□□□ 0.17
VPS4A-202ENST00000562754 MECRQ9BV79 373 aa16.1■□□□□ 0.17
VPS4A-202ENST00000562754 XKR8Q9H6D3 395 aa16.1■□□□□ 0.17
VPS4A-202ENST00000562754 SPATA7Q9P0W8 599 aa16.1■□□□□ 0.17
VPS4A-202ENST00000562754 COPG2Q9UBF2 871 aa16.1■□□□□ 0.17
VPS4A-202ENST00000562754 ASB1Q9Y576 335 aa16.1■□□□□ 0.17
VPS4A-202ENST00000562754 RNF215Q9Y6U7 377 aa16.1■□□□□ 0.17
VPS4A-202ENST00000562754 RIF1Q5UIP0 2472 aaKnown RBP16.09■□□□□ 0.17
VPS4A-202ENST00000562754 ZFHX2Q9C0A1 2572 aaPredicted RBP16.09■□□□□ 0.17
VPS4A-202ENST00000562754 ASXL3Q9C0F0 2248 aa16.09■□□□□ 0.17
VPS4A-202ENST00000562754 LRRC14BA6NHZ5 514 aa16.09■□□□□ 0.17
VPS4A-202ENST00000562754 C4orf47A7E2U8 309 aa16.09■□□□□ 0.17
VPS4A-202ENST00000562754 TAPBPO15533 448 aa16.09■□□□□ 0.17
VPS4A-202ENST00000562754 FLRT2O43155 660 aa16.09■□□□□ 0.17
VPS4A-202ENST00000562754 S100BP04271 92 aaPredicted RBP16.09■□□□□ 0.17
VPS4A-202ENST00000562754 ANXA5P08758 320 aa16.09■□□□□ 0.17
VPS4A-202ENST00000562754 MYL2P10916 166 aa16.09■□□□□ 0.17
VPS4A-202ENST00000562754 GFAPP14136 432 aa16.09■□□□□ 0.17
VPS4A-202ENST00000562754 CPA3P15088 417 aa16.09■□□□□ 0.17
VPS4A-202ENST00000562754 ATP5F1P24539 256 aaPredicted RBP16.09■□□□□ 0.17
VPS4A-202ENST00000562754 GRK6P43250 576 aa16.09■□□□□ 0.17
VPS4A-202ENST00000562754 SERPINB4P48594 390 aa16.09■□□□□ 0.17
VPS4A-202ENST00000562754 AGTR2P50052 363 aa16.09■□□□□ 0.17
VPS4A-202ENST00000562754 NFKB2Q00653 900 aa16.09■□□□□ 0.17
VPS4A-202ENST00000562754 SUZ12Q15022 739 aaKnown RBP16.09■□□□□ 0.17
VPS4A-202ENST00000562754 SETDB1Q15047 1291 aa16.09■□□□□ 0.17
VPS4A-202ENST00000562754 PFKFB4Q16877 469 aa16.09■□□□□ 0.17
VPS4A-202ENST00000562754 CDKL4Q5MAI5 379 aa16.09■□□□□ 0.17
VPS4A-202ENST00000562754 SULT1C3Q6IMI6 304 aa16.09■□□□□ 0.17
VPS4A-202ENST00000562754 ZNF438Q7Z4V0 828 aa16.09■□□□□ 0.17
VPS4A-202ENST00000562754 RBM12BQ8IXT5 1001 aaKnown RBP16.09■□□□□ 0.17
VPS4A-202ENST00000562754 LRRC56Q8IYG6 542 aaPredicted RBP16.09■□□□□ 0.17
VPS4A-202ENST00000562754 FBXO39Q8N4B4 442 aa16.09■□□□□ 0.17
VPS4A-202ENST00000562754 UBTD2Q8WUN7 234 aa16.09■□□□□ 0.17
VPS4A-202ENST00000562754 ZFPM2Q8WW38 1151 aa16.09■□□□□ 0.17
VPS4A-202ENST00000562754 STN1Q9H668 368 aaKnown RBP16.09■□□□□ 0.17
VPS4A-202ENST00000562754 FAM53CQ9NYF3 392 aa16.09■□□□□ 0.17
VPS4A-202ENST00000562754 NKIRAS1Q9NYS0 192 aa16.09■□□□□ 0.17
VPS4A-202ENST00000562754 MID2Q9UJV3 735 aa16.09■□□□□ 0.17
VPS4A-202ENST00000562754 PTBP2Q9UKA9 531 aaKnown RBP16.09■□□□□ 0.17
VPS4A-202ENST00000562754 PADI4Q9UM07 663 aa16.09■□□□□ 0.17
VPS4A-202ENST00000562754 GVINP1Q7Z2Y8 2422 aa16.08■□□□□ 0.17
VPS4A-202ENST00000562754 PABPN1LA6NDY0 278 aaKnown RBP16.08■□□□□ 0.16
VPS4A-202ENST00000562754 LILRA5A6NI73 299 aa16.08■□□□□ 0.16
VPS4A-202ENST00000562754 SMIM24O75264 130 aa16.08■□□□□ 0.16
VPS4A-202ENST00000562754 TAC1P20366 129 aa16.08■□□□□ 0.16
VPS4A-202ENST00000562754 KCNA4P22459 653 aa16.08■□□□□ 0.16
VPS4A-202ENST00000562754 OAS2P29728 719 aaKnown RBP16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms