RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 RNF11Q9Y3C5 154 aa20.7■□□□□ 0.9
CLN3-209ENST00000561689 ST14Q9Y5Y6 855 aa20.7■□□□□ 0.9
CLN3-209ENST00000561689 ESRRAP11474 423 aaPredicted RBP20.7■□□□□ 0.9
CLN3-209ENST00000561689 IMPA1P29218 277 aa20.7■□□□□ 0.9
CLN3-209ENST00000561689 CD6P30203 668 aa20.7■□□□□ 0.9
CLN3-209ENST00000561689 AKT2P31751 481 aa20.7■□□□□ 0.9
CLN3-209ENST00000561689 CPA2P48052 419 aa20.7■□□□□ 0.9
CLN3-209ENST00000561689 NAE1Q13564 534 aa20.7■□□□□ 0.9
CLN3-209ENST00000561689 NFATC4Q14934 902 aa20.7■□□□□ 0.9
CLN3-209ENST00000561689 KIAA0895LQ68EN5 471 aa20.7■□□□□ 0.9
CLN3-209ENST00000561689 TTC23LQ6PF05 361 aa20.7■□□□□ 0.9
CLN3-209ENST00000561689 ENPP7Q6UWV6 458 aa20.7■□□□□ 0.9
CLN3-209ENST00000561689 LARP4Q71RC2 724 aaKnown RBP eCLIP20.7■□□□□ 0.91e-6■□□□□ 8.2
CLN3-209ENST00000561689 ATL1Q8WXF7 558 aa20.7■□□□□ 0.9
CLN3-209ENST00000561689 CARS2Q9HA77 564 aaKnown RBP20.7■□□□□ 0.9
CLN3-209ENST00000561689 DNAJC11Q9NVH1 559 aa20.7■□□□□ 0.9
CLN3-209ENST00000561689 PRSS38A1L453 326 aa20.69■□□□□ 0.9
CLN3-209ENST00000561689 C10orf142B7Z368 130 aa20.69■□□□□ 0.9
CLN3-209ENST00000561689 HOXC4P09017 264 aaPredicted RBP20.69■□□□□ 0.9
CLN3-209ENST00000561689 HGFP14210 728 aa20.69■□□□□ 0.9
CLN3-209ENST00000561689 CLCNKAP51800 687 aa20.69■□□□□ 0.9
CLN3-209ENST00000561689 KIAA1024LP59773 190 aa20.69■□□□□ 0.9
CLN3-209ENST00000561689 TBCCQ15814 346 aa20.69■□□□□ 0.9
CLN3-209ENST00000561689 LMNTD1Q8N9Z9 388 aa20.69■□□□□ 0.9
CLN3-209ENST00000561689 FBXO15Q8NCQ5 510 aaPredicted RBP20.69■□□□□ 0.9
CLN3-209ENST00000561689 OR5AR1Q8NGP9 310 aa20.69■□□□□ 0.9
CLN3-209ENST00000561689 TFGQ92734 400 aaPredicted RBP20.69■□□□□ 0.9
CLN3-209ENST00000561689 BIRC7Q96CA5 298 aa20.69■□□□□ 0.9
CLN3-209ENST00000561689 KLHL29Q96CT2 875 aa20.69■□□□□ 0.9
CLN3-209ENST00000561689 TUBGCP3Q96CW5 907 aa20.69■□□□□ 0.9
CLN3-209ENST00000561689 SLC7A6OSQ96CW6 309 aaPredicted RBP20.69■□□□□ 0.9
CLN3-209ENST00000561689 HBEGFQ99075 208 aa20.69■□□□□ 0.9
CLN3-209ENST00000561689 TUBB6Q9BUF5 446 aa20.69■□□□□ 0.9
CLN3-209ENST00000561689 NTMT1Q9BV86 223 aa20.69■□□□□ 0.9
CLN3-209ENST00000561689 ACTR8Q9H981 624 aa20.69■□□□□ 0.9
CLN3-209ENST00000561689 INTS7Q9NVH2 962 aaKnown RBP20.69■□□□□ 0.9
CLN3-209ENST00000561689 THEGQ9P2T0 379 aa20.69■□□□□ 0.9
CLN3-209ENST00000561689 POLG2Q9UHN1 485 aa20.69■□□□□ 0.9
CLN3-209ENST00000561689 WDR37Q9Y2I8 494 aa20.69■□□□□ 0.9
CLN3-209ENST00000561689 FFAR3O14843 346 aa20.68■□□□□ 0.9
CLN3-209ENST00000561689 GPR42O15529 346 aa20.68■□□□□ 0.9
CLN3-209ENST00000561689 EBLN1P0CF75 366 aa20.68■□□□□ 0.9
CLN3-209ENST00000561689 CD1EP15812 388 aa20.68■□□□□ 0.9
CLN3-209ENST00000561689 CALB2P22676 271 aa20.68■□□□□ 0.9
CLN3-209ENST00000561689 OXTRP30559 389 aa20.68■□□□□ 0.9
CLN3-209ENST00000561689 HTR6P50406 440 aa20.68■□□□□ 0.9
CLN3-209ENST00000561689 KLF10Q13118 480 aa20.68■□□□□ 0.9
CLN3-209ENST00000561689 TCEA2Q15560 299 aa20.68■□□□□ 0.9
CLN3-209ENST00000561689 UNC5DQ6UXZ4 953 aa20.68■□□□□ 0.9
CLN3-209ENST00000561689 EFL1Q7Z2Z2 1120 aaKnown RBP20.68■□□□□ 0.9
CLN3-209ENST00000561689 RD3Q7Z3Z2 195 aa20.68■□□□□ 0.9
CLN3-209ENST00000561689 UBALD2Q8IYN6 164 aa20.68■□□□□ 0.9
CLN3-209ENST00000561689 POU5F2Q8N7G0 328 aa20.68■□□□□ 0.9
CLN3-209ENST00000561689 ZNF480Q8WV37 535 aa20.68■□□□□ 0.9
CLN3-209ENST00000561689 PDXPQ96GD0 296 aa20.68■□□□□ 0.9
CLN3-209ENST00000561689 TIMM29Q9BSF4 260 aa20.68■□□□□ 0.9
CLN3-209ENST00000561689 ZNF385DQ9H6B1 395 aa20.68■□□□□ 0.9
CLN3-209ENST00000561689 TAGLN3Q9UI15 199 aa20.68■□□□□ 0.9
CLN3-209ENST00000561689 MUTYHQ9UIF7 546 aa20.68■□□□□ 0.9
CLN3-209ENST00000561689 COPG1Q9Y678 874 aaKnown RBP20.68■□□□□ 0.9
CLN3-209ENST00000561689 KLHL33A6NCF5 533 aa20.68■□□□□ 0.9
CLN3-209ENST00000561689 SLC35G4P0C7Q5 338 aa20.68■□□□□ 0.9
CLN3-209ENST00000561689 HMOX2P30519 316 aa20.68■□□□□ 0.9
CLN3-209ENST00000561689 DMPKQ09013 629 aa20.68■□□□□ 0.9
CLN3-209ENST00000561689 PRKG2Q13237 762 aa20.68■□□□□ 0.9
CLN3-209ENST00000561689 GRB7Q14451 532 aa20.68■□□□□ 0.9
CLN3-209ENST00000561689 CHSY3Q70JA7 882 aa20.68■□□□□ 0.9
CLN3-209ENST00000561689 ASRGL1Q7L266 308 aa20.68■□□□□ 0.9
CLN3-209ENST00000561689 THOC6Q86W42 341 aaKnown RBP20.68■□□□□ 0.9
CLN3-209ENST00000561689 TMEM145Q8NBT3 493 aa20.68■□□□□ 0.9
CLN3-209ENST00000561689 PJA1Q8NG27 643 aa20.68■□□□□ 0.9
CLN3-209ENST00000561689 OR9A1PQ8NGU1 263 aa20.68■□□□□ 0.9
CLN3-209ENST00000561689 OR1E3Q8WZA6 343 aa20.68■□□□□ 0.9
CLN3-209ENST00000561689 SCARF2Q96GP6 870 aaPredicted RBP20.68■□□□□ 0.9
CLN3-209ENST00000561689 ACSL5Q9ULC5 683 aa20.68■□□□□ 0.9
CLN3-209ENST00000561689 IFRD1O00458 451 aaPredicted RBP20.67■□□□□ 0.9
CLN3-209ENST00000561689 UBDO15205 165 aa20.67■□□□□ 0.9
CLN3-209ENST00000561689 ZNF217O75362 1048 aa20.67■□□□□ 0.9
CLN3-209ENST00000561689 HTR1BP28222 390 aa20.67■□□□□ 0.9
CLN3-209ENST00000561689 CCR5P51681 352 aa20.67■□□□□ 0.9
CLN3-209ENST00000561689 IL27RAQ6UWB1 636 aa20.67■□□□□ 0.9
CLN3-209ENST00000561689 Q6ZSR6 202 aa20.67■□□□□ 0.9
CLN3-209ENST00000561689 SYTL1Q8IYJ3 562 aa20.67■□□□□ 0.9
CLN3-209ENST00000561689 CPSF7Q8N684 471 aaKnown RBP20.67■□□□□ 0.9
CLN3-209ENST00000561689 TSACCQ96A04 125 aaPredicted RBP20.67■□□□□ 0.9
CLN3-209ENST00000561689 WDR92Q96MX6 357 aa20.67■□□□□ 0.9
CLN3-209ENST00000561689 PLAGL1Q9UM63 463 aa20.67■□□□□ 0.9
CLN3-209ENST00000561689 TDRKHQ9Y2W6 561 aaKnown RBP20.67■□□□□ 0.9
CLN3-209ENST00000561689 IGHV1OR15-9A0A0B4J2B8 117 aa20.66■□□□□ 0.9
CLN3-209ENST00000561689 LOC100653049A0A140TA62 436 aa20.66■□□□□ 0.9
CLN3-209ENST00000561689 H0YHG0 523 aa20.66■□□□□ 0.9
CLN3-209ENST00000561689 DNAJC8O75937 253 aaPredicted RBP20.66■□□□□ 0.9
CLN3-209ENST00000561689 KRT34O76011 436 aa20.66■□□□□ 0.9
CLN3-209ENST00000561689 CLDN9O95484 217 aa20.66■□□□□ 0.9
CLN3-209ENST00000561689 CDC16Q13042 620 aa20.66■□□□□ 0.9
CLN3-209ENST00000561689 MTAPQ13126 283 aa20.66■□□□□ 0.9
CLN3-209ENST00000561689 TSTA3Q13630 321 aaPredicted RBP20.66■□□□□ 0.9
CLN3-209ENST00000561689 ABRAXAS2Q15018 415 aa20.66■□□□□ 0.9
CLN3-209ENST00000561689 DUS1LQ6P1R4 473 aaKnown RBP20.66■□□□□ 0.9
CLN3-209ENST00000561689 OR2T11Q8NH01 316 aa20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 136.1 ms