RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 ALG9Q9H6U8 611 aa12.44□□□□□ -0.42
SHMT2-227ENST00000557269 PARVBQ9HBI1 364 aa12.44□□□□□ -0.42
SHMT2-227ENST00000557269 UTP6Q9NYH9 597 aaKnown RBP12.44□□□□□ -0.42
SHMT2-227ENST00000557269 ATXN7L1Q9ULK2 861 aaPredicted RBP12.44□□□□□ -0.42
SHMT2-227ENST00000557269 OPA1O60313 960 aa12.43□□□□□ -0.42
SHMT2-227ENST00000557269 RFPL3O75679 317 aa12.43□□□□□ -0.42
SHMT2-227ENST00000557269 UBXN7O94888 489 aa12.43□□□□□ -0.42
SHMT2-227ENST00000557269 DKK1O94907 266 aa12.43□□□□□ -0.42
SHMT2-227ENST00000557269 GUCA1CO95843 209 aa12.43□□□□□ -0.42
SHMT2-227ENST00000557269 RPN2P04844 631 aa12.43□□□□□ -0.42
SHMT2-227ENST00000557269 GP1BAP07359 652 aa12.43□□□□□ -0.42
SHMT2-227ENST00000557269 CEACAM1P13688 526 aa12.43□□□□□ -0.42
SHMT2-227ENST00000557269 HOXB3P14651 431 aaPredicted RBP12.43□□□□□ -0.42
SHMT2-227ENST00000557269 KRT4P19013 534 aa12.43□□□□□ -0.42
SHMT2-227ENST00000557269 MAP4P27816 1152 aaKnown RBP12.43□□□□□ -0.42
SHMT2-227ENST00000557269 PKLRP30613 574 aa12.43□□□□□ -0.42
SHMT2-227ENST00000557269 EPHA4P54764 986 aa12.43□□□□□ -0.42
SHMT2-227ENST00000557269 C18orf21Q32NC0 220 aaPredicted RBP12.43□□□□□ -0.42
SHMT2-227ENST00000557269 TNFAIP8L3Q5GJ75 292 aa12.43□□□□□ -0.42
SHMT2-227ENST00000557269 C16orf46Q6P387 395 aa12.43□□□□□ -0.42
SHMT2-227ENST00000557269 TTC23LQ6PF05 361 aa12.43□□□□□ -0.42
SHMT2-227ENST00000557269 HDXQ7Z353 690 aa12.43□□□□□ -0.42
SHMT2-227ENST00000557269 CCDC91Q7Z6B0 441 aa12.43□□□□□ -0.42
SHMT2-227ENST00000557269 AMIGO1Q86WK6 493 aa12.43□□□□□ -0.42
SHMT2-227ENST00000557269 ADGRF3Q8IZF5 1079 aa12.43□□□□□ -0.42
SHMT2-227ENST00000557269 C4orf33Q8N1A6 199 aa12.43□□□□□ -0.42
SHMT2-227ENST00000557269 TMEM151AQ8N4L1 468 aa12.43□□□□□ -0.42
SHMT2-227ENST00000557269 PPFIBP2Q8ND30 876 aa12.43□□□□□ -0.42
SHMT2-227ENST00000557269 OR10G6Q8NH81 332 aa12.43□□□□□ -0.42
SHMT2-227ENST00000557269 MCOLN3Q8TDD5 553 aa12.43□□□□□ -0.42
SHMT2-227ENST00000557269 ACMSDQ8TDX5 336 aa12.43□□□□□ -0.42
SHMT2-227ENST00000557269 ZNF480Q8WV37 535 aa12.43□□□□□ -0.42
SHMT2-227ENST00000557269 NUDT22Q9BRQ3 303 aa12.43□□□□□ -0.42
SHMT2-227ENST00000557269 RTKNQ9BST9 563 aa12.43□□□□□ -0.42
SHMT2-227ENST00000557269 TWSG1Q9GZX9 223 aa12.43□□□□□ -0.42
SHMT2-227ENST00000557269 C12orf65Q9H3J6 166 aaKnown RBP12.43□□□□□ -0.42
SHMT2-227ENST00000557269 CENPHQ9H3R5 247 aa12.43□□□□□ -0.42
SHMT2-227ENST00000557269 LRRN3Q9H3W5 708 aa12.43□□□□□ -0.42
SHMT2-227ENST00000557269 SRMSQ9H3Y6 488 aa12.43□□□□□ -0.42
SHMT2-227ENST00000557269 RDH14Q9HBH5 336 aa12.43□□□□□ -0.42
SHMT2-227ENST00000557269 NMRAL1Q9HBL8 299 aa12.43□□□□□ -0.42
SHMT2-227ENST00000557269 EVA1BQ9NVM1 165 aa12.43□□□□□ -0.42
SHMT2-227ENST00000557269 SPHK1Q9NYA1 384 aa12.43□□□□□ -0.42
SHMT2-227ENST00000557269 DLL3Q9NYJ7 618 aa12.43□□□□□ -0.42
SHMT2-227ENST00000557269 TMEM216Q9P0N5 145 aa12.43□□□□□ -0.42
SHMT2-227ENST00000557269 TMEM9Q9P0T7 183 aa12.43□□□□□ -0.42
SHMT2-227ENST00000557269 NOVA2Q9UNW9 492 aaKnown RBP12.43□□□□□ -0.42
SHMT2-227ENST00000557269 ASXL3Q9C0F0 2248 aa12.43□□□□□ -0.42
SHMT2-227ENST00000557269 GOLGA4Q13439 2230 aaKnown RBP12.42□□□□□ -0.42
SHMT2-227ENST00000557269 RP1P56715 2156 aa12.42□□□□□ -0.42
SHMT2-227ENST00000557269 NTN3O00634 580 aaPredicted RBP12.42□□□□□ -0.42
SHMT2-227ENST00000557269 RGS16O15492 202 aaPredicted RBP12.42□□□□□ -0.42
SHMT2-227ENST00000557269 SLC16A8O95907 504 aa12.42□□□□□ -0.42
SHMT2-227ENST00000557269 PROS1P07225 676 aa12.42□□□□□ -0.42
SHMT2-227ENST00000557269 SBK3P0C264 359 aa12.42□□□□□ -0.42
SHMT2-227ENST00000557269 FTH1P19P0C7X4 201 aa12.42□□□□□ -0.42
SHMT2-227ENST00000557269 ERGP11308 486 aa12.42□□□□□ -0.42
SHMT2-227ENST00000557269 COL6A2P12110 1019 aa12.42□□□□□ -0.42
SHMT2-227ENST00000557269 POLR2CP19387 275 aaPredicted RBP12.42□□□□□ -0.42
SHMT2-227ENST00000557269 CYP2A7P20853 494 aa12.42□□□□□ -0.42
SHMT2-227ENST00000557269 MPSTP25325 297 aa12.42□□□□□ -0.42
SHMT2-227ENST00000557269 IMPA1P29218 277 aa12.42□□□□□ -0.42
SHMT2-227ENST00000557269 PEBP1P30086 187 aaKnown RBP12.42□□□□□ -0.42
SHMT2-227ENST00000557269 RAB28P51157 221 aa12.42□□□□□ -0.42
SHMT2-227ENST00000557269 INSM1Q01101 510 aaPredicted RBP12.42□□□□□ -0.42
SHMT2-227ENST00000557269 SLC18A2Q05940 514 aa12.42□□□□□ -0.42
SHMT2-227ENST00000557269 ACAP2Q15057 778 aa12.42□□□□□ -0.42
SHMT2-227ENST00000557269 CYP2A13Q16696 494 aa12.42□□□□□ -0.42
SHMT2-227ENST00000557269 FAM83EQ2M2I3 478 aa12.42□□□□□ -0.42
SHMT2-227ENST00000557269 TECRLQ5HYJ1 363 aa12.42□□□□□ -0.42
SHMT2-227ENST00000557269 DHRS13Q6UX07 377 aa12.42□□□□□ -0.42
SHMT2-227ENST00000557269 ZNF574Q6ZN55 896 aaPredicted RBP12.42□□□□□ -0.42
SHMT2-227ENST00000557269 ADAMTSL2Q86TH1 951 aa12.42□□□□□ -0.42
SHMT2-227ENST00000557269 TAX1BP1Q86VP1 789 aa12.42□□□□□ -0.42
SHMT2-227ENST00000557269 GPSM1Q86YR5 675 aa12.42□□□□□ -0.42
SHMT2-227ENST00000557269 SRRM1Q8IYB3 904 aaKnown RBP12.42□□□□□ -0.42
SHMT2-227ENST00000557269 LRRC56Q8IYG6 542 aaPredicted RBP12.42□□□□□ -0.42
SHMT2-227ENST00000557269 FLVCR1-AS1Q8TAF5 88 aa12.42□□□□□ -0.42
SHMT2-227ENST00000557269 MAGEC3Q8TD91 643 aa12.42□□□□□ -0.42
SHMT2-227ENST00000557269 NCSTNQ92542 709 aa12.42□□□□□ -0.42
SHMT2-227ENST00000557269 EXT2Q93063 718 aa12.42□□□□□ -0.42
SHMT2-227ENST00000557269 CABS1Q96KC9 395 aa12.42□□□□□ -0.42
SHMT2-227ENST00000557269 PPM1MQ96MI6 270 aa12.42□□□□□ -0.42
SHMT2-227ENST00000557269 ATOH8Q96SQ7 321 aa12.42□□□□□ -0.42
SHMT2-227ENST00000557269 SYNDIG1Q9H7V2 258 aa12.42□□□□□ -0.42
SHMT2-227ENST00000557269 HRASLS2Q9NWW9 162 aa12.42□□□□□ -0.42
SHMT2-227ENST00000557269 ARL15Q9NXU5 204 aa12.42□□□□□ -0.42
SHMT2-227ENST00000557269 STOX2Q9P2F5 926 aaPredicted RBP12.42□□□□□ -0.42
SHMT2-227ENST00000557269 EMCNQ9ULC0 261 aa12.42□□□□□ -0.42
SHMT2-227ENST00000557269 OARD1Q9Y530 152 aa12.42□□□□□ -0.42
SHMT2-227ENST00000557269 PCNX2A6NKB5 2137 aa12.41□□□□□ -0.42
SHMT2-227ENST00000557269 CEP250Q9BV73 2442 aa12.41□□□□□ -0.42
SHMT2-227ENST00000557269 A0A1W2PPV9 198 aa12.41□□□□□ -0.42
SHMT2-227ENST00000557269 OR5K3A6NET4 321 aa12.41□□□□□ -0.42
SHMT2-227ENST00000557269 NCF1BA6NI72 391 aaPredicted RBP12.41□□□□□ -0.42
SHMT2-227ENST00000557269 NCF1CA8MVU1 366 aaPredicted RBP12.41□□□□□ -0.42
SHMT2-227ENST00000557269 UBXN8O00124 270 aa12.41□□□□□ -0.42
SHMT2-227ENST00000557269 MAP2K7O14733 419 aa12.41□□□□□ -0.42
SHMT2-227ENST00000557269 TAPBPO15533 448 aa12.41□□□□□ -0.42
SHMT2-227ENST00000557269 KERAO60938 352 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms