RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 TRIM74Q86UV6 250 aa25.66■■□□□ 1.7
CCDC88C-205ENST00000553403 ZFAND4Q86XD8 727 aa25.66■■□□□ 1.7
CCDC88C-205ENST00000553403 LILRA3Q8N6C8 439 aaPredicted RBP25.66■■□□□ 1.7
CCDC88C-205ENST00000553403 RNF148Q8N7C7 305 aa25.66■■□□□ 1.7
CCDC88C-205ENST00000553403 ZNF513Q8N8E2 541 aaPredicted RBP25.66■■□□□ 1.7
CCDC88C-205ENST00000553403 PROKR1Q8TCW9 393 aa25.66■■□□□ 1.7
CCDC88C-205ENST00000553403 HIC2Q96JB3 615 aa25.66■■□□□ 1.7
CCDC88C-205ENST00000553403 HBEGFQ99075 208 aa25.66■■□□□ 1.7
CCDC88C-205ENST00000553403 NMRK1Q9NWW6 199 aa25.66■■□□□ 1.7
CCDC88C-205ENST00000553403 ATXN10Q9UBB4 475 aa25.66■■□□□ 1.7
CCDC88C-205ENST00000553403 EIF3LQ9Y262 564 aaKnown RBP25.66■■□□□ 1.7
CCDC88C-205ENST00000553403 SLC22A14Q9Y267 594 aa25.66■■□□□ 1.7
CCDC88C-205ENST00000553403 SERTM1A2A2V5 107 aa25.65■■□□□ 1.7
CCDC88C-205ENST00000553403 CCDC154A6NI56 674 aa25.65■■□□□ 1.7
CCDC88C-205ENST00000553403 MID1O15344 667 aa25.65■■□□□ 1.7
CCDC88C-205ENST00000553403 SLC2A4P14672 509 aa25.65■■□□□ 1.7
CCDC88C-205ENST00000553403 C5AR1P21730 350 aa25.65■■□□□ 1.7
CCDC88C-205ENST00000553403 PBLDP30039 288 aaPredicted RBP25.65■■□□□ 1.7
CCDC88C-205ENST00000553403 DLX2Q07687 328 aaPredicted RBP25.65■■□□□ 1.7
CCDC88C-205ENST00000553403 PRKG2Q13237 762 aa25.65■■□□□ 1.7
CCDC88C-205ENST00000553403 IMPG1Q17R60 797 aa25.65■■□□□ 1.7
CCDC88C-205ENST00000553403 SPATS1Q496A3 300 aa25.65■■□□□ 1.7
CCDC88C-205ENST00000553403 RFTN2Q52LD8 501 aaPredicted RBP25.65■■□□□ 1.7
CCDC88C-205ENST00000553403 TRAPPC5Q8IUR0 188 aa25.65■■□□□ 1.7
CCDC88C-205ENST00000553403 FARSBQ9NSD9 589 aaKnown RBP25.65■■□□□ 1.7
CCDC88C-205ENST00000553403 LMCD1Q9NZU5 365 aa25.65■■□□□ 1.7
CCDC88C-205ENST00000553403 ABCD2Q9UBJ2 740 aa25.65■■□□□ 1.7
CCDC88C-205ENST00000553403 C9JVG2 144 aa25.64■■□□□ 1.7
CCDC88C-205ENST00000553403 H3BM21 787 aa25.64■■□□□ 1.7
CCDC88C-205ENST00000553403 UGDHO60701 494 aa25.64■■□□□ 1.7
CCDC88C-205ENST00000553403 G6PDP11413 515 aa25.64■■□□□ 1.7
CCDC88C-205ENST00000553403 IL12AP29459 219 aa25.64■■□□□ 1.7
CCDC88C-205ENST00000553403 WASP42768 502 aa25.64■■□□□ 1.7
CCDC88C-205ENST00000553403 AGBL4Q5VU57 503 aa25.64■■□□□ 1.7
CCDC88C-205ENST00000553403 DHDDSQ86SQ9 333 aa25.64■■□□□ 1.7
CCDC88C-205ENST00000553403 AADATQ8N5Z0 425 aa25.64■■□□□ 1.7
CCDC88C-205ENST00000553403 PYCR2Q96C36 320 aa25.64■■□□□ 1.7
CCDC88C-205ENST00000553403 COX14Q96I36 57 aa25.64■■□□□ 1.7
CCDC88C-205ENST00000553403 LRTM1Q9HBL6 345 aa25.64■■□□□ 1.7
CCDC88C-205ENST00000553403 EPS15L1Q9UBC2 864 aa25.64■■□□□ 1.7
CCDC88C-205ENST00000553403 GULP1Q9UBP9 304 aa25.64■■□□□ 1.7
CCDC88C-205ENST00000553403 POLR3HQ9Y535 204 aaPredicted RBP25.64■■□□□ 1.7
CCDC88C-205ENST00000553403 H3BNX3 289 aa25.64■■□□□ 1.69
CCDC88C-205ENST00000553403 ANKRD28O15084 1053 aa25.64■■□□□ 1.69
CCDC88C-205ENST00000553403 MAP3K7O43318 606 aa25.64■■□□□ 1.69
CCDC88C-205ENST00000553403 JAK1P23458 1154 aa25.64■■□□□ 1.69
CCDC88C-205ENST00000553403 SLC7A2P52569 658 aa25.64■■□□□ 1.69
CCDC88C-205ENST00000553403 TAF11Q15544 211 aa25.64■■□□□ 1.69
CCDC88C-205ENST00000553403 CPSF6Q16630 551 aaKnown RBP eCLIP25.64■■□□□ 1.69
CCDC88C-205ENST00000553403 MUM1Q2TAK8 710 aa25.64■■□□□ 1.69
CCDC88C-205ENST00000553403 RGL4Q8IZJ4 473 aa25.64■■□□□ 1.69
CCDC88C-205ENST00000553403 CSGALNACT1Q8TDX6 532 aa25.64■■□□□ 1.69
CCDC88C-205ENST00000553403 LRRC58Q96CX6 371 aa25.64■■□□□ 1.69
CCDC88C-205ENST00000553403 ATG10Q9H0Y0 220 aa25.64■■□□□ 1.69
CCDC88C-205ENST00000553403 STOX2Q9P2F5 926 aaPredicted RBP25.64■■□□□ 1.69
CCDC88C-205ENST00000553403 ZNHIT2Q9UHR6 403 aa25.64■■□□□ 1.69
CCDC88C-205ENST00000553403 CDH23Q9H251 3354 aa25.64■■□□□ 1.69
CCDC88C-205ENST00000553403 ASPDHA6ND91 283 aa25.63■■□□□ 1.69
CCDC88C-205ENST00000553403 PRORSD1PA6NEY8 169 aa25.63■■□□□ 1.69
CCDC88C-205ENST00000553403 NPIPB8E9PQR5 432 aa25.63■■□□□ 1.69
CCDC88C-205ENST00000553403 FXYD1O00168 92 aa25.63■■□□□ 1.69
CCDC88C-205ENST00000553403 NPPAP01160 153 aa25.63■■□□□ 1.69
CCDC88C-205ENST00000553403 ITPKAP23677 461 aa25.63■■□□□ 1.69
CCDC88C-205ENST00000553403 PDHA2P29803 388 aa25.63■■□□□ 1.69
CCDC88C-205ENST00000553403 KIR2DL1P43626 348 aaPredicted RBP25.63■■□□□ 1.69
CCDC88C-205ENST00000553403 SOX9P48436 509 aa25.63■■□□□ 1.69
CCDC88C-205ENST00000553403 TAS2R38P59533 333 aa25.63■■□□□ 1.69
CCDC88C-205ENST00000553403 RPL38P63173 70 aaKnown RBP25.63■■□□□ 1.69
CCDC88C-205ENST00000553403 ZNF33BQ06732 778 aa25.63■■□□□ 1.69
CCDC88C-205ENST00000553403 PCDH1Q08174 1060 aa25.63■■□□□ 1.69
CCDC88C-205ENST00000553403 AGERQ15109 404 aa25.63■■□□□ 1.69
CCDC88C-205ENST00000553403 TLR1Q15399 786 aa25.63■■□□□ 1.69
CCDC88C-205ENST00000553403 SGO1Q5FBB7 561 aa25.63■■□□□ 1.69
CCDC88C-205ENST00000553403 LIPJQ5W064 366 aa25.63■■□□□ 1.69
CCDC88C-205ENST00000553403 AGTRAPQ6RW13 159 aa25.63■■□□□ 1.69
CCDC88C-205ENST00000553403 CFAP206Q8IYR0 622 aa25.63■■□□□ 1.69
CCDC88C-205ENST00000553403 BHLHE22Q8NFJ8 381 aaPredicted RBP25.63■■□□□ 1.69
CCDC88C-205ENST00000553403 HM13Q8TCT9 377 aa25.63■■□□□ 1.69
CCDC88C-205ENST00000553403 DNAJC9Q8WXX5 260 aa25.63■■□□□ 1.69
CCDC88C-205ENST00000553403 C1orf109Q9NX04 203 aa25.63■■□□□ 1.69
CCDC88C-205ENST00000553403 PSMD13Q9UNM6 376 aa25.63■■□□□ 1.69
CCDC88C-205ENST00000553403 K7EQS6 105 aa25.62■■□□□ 1.69
CCDC88C-205ENST00000553403 JUPP14923 745 aa25.62■■□□□ 1.69
CCDC88C-205ENST00000553403 PCSK2P16519 638 aa25.62■■□□□ 1.69
CCDC88C-205ENST00000553403 ZNF8P17098 575 aaPredicted RBP25.62■■□□□ 1.69
CCDC88C-205ENST00000553403 MSX2P35548 267 aaPredicted RBP25.62■■□□□ 1.69
CCDC88C-205ENST00000553403 BDKRB1P46663 353 aa25.62■■□□□ 1.69
CCDC88C-205ENST00000553403 MAP7D1Q3KQU3 841 aa25.62■■□□□ 1.69
CCDC88C-205ENST00000553403 PNCKQ6P2M8 343 aa25.62■■□□□ 1.69
CCDC88C-205ENST00000553403 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP25.62■■□□□ 1.69
CCDC88C-205ENST00000553403 THOC6Q86W42 341 aaKnown RBP25.62■■□□□ 1.69
CCDC88C-205ENST00000553403 SELENOMQ8WWX9 145 aa25.62■■□□□ 1.69
CCDC88C-205ENST00000553403 ERLEC1Q96DZ1 483 aa25.62■■□□□ 1.69
CCDC88C-205ENST00000553403 PKP4Q99569 1192 aa25.62■■□□□ 1.69
CCDC88C-205ENST00000553403 ACTL8Q9H568 366 aa25.62■■□□□ 1.69
CCDC88C-205ENST00000553403 ELOVL6Q9H5J4 265 aa25.62■■□□□ 1.69
CCDC88C-205ENST00000553403 IGLON5A6NGN9 336 aa25.61■■□□□ 1.69
CCDC88C-205ENST00000553403 POP7O75817 140 aaKnown RBP25.61■■□□□ 1.69
CCDC88C-205ENST00000553403 RSL1D1O76021 490 aaKnown RBP25.61■■□□□ 1.69
CCDC88C-205ENST00000553403 C1orf105O95561 183 aa25.61■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms