RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 RYKP34925 604 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 SLC19A1P41440 591 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 NUDT6P53370 316 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 CYP4F2P78329 520 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 HMGCS1Q01581 520 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 CYP4F3Q08477 520 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 ACOX1Q15067 660 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 ZNF404Q494X3 552 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 TIGD5Q53EQ6 642 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 ALFQ53S48 1182 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 SPANXN4Q5MJ08 99 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 TPRG1LQ5T0D9 272 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 FAM171A1Q5VUB5 890 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 CPZQ66K79 652 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 IL27RAQ6UWB1 636 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 NRARPQ7Z6K4 114 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 SVOPQ8N4V2 548 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 KIAA1958Q8N8K9 716 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 SIDT2Q8NBJ9 832 aaKnown RBP4.75□□□□□ -1.65
LIMA1-214ENST00000552783 CALML6Q8TD86 181 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 EEF1AKMT1Q8WVE0 214 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 MYEOVQ96EZ4 313 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 IMP4Q96G21 291 aaKnown RBP4.75□□□□□ -1.65
LIMA1-214ENST00000552783 ST6GAL2Q96JF0 529 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 GPR21Q99679 349 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 PRRG3Q9BZD7 231 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 MUC13Q9H3R2 512 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 CATSPERBQ9H7T0 1116 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 ZFP14Q9HCL3 533 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 USE1Q9NZ43 259 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 FAM8A1Q9UBU6 413 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 C3orf18Q9UK00 162 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 TBC1D24Q9ULP9 559 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 UPK3BL1B0FP48 263 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 MYO1GB0I1T2 1018 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 UPK3BL2E5RIL1 263 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 F8W810 466 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 MEN1O00255 615 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 GSTA4O15217 222 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 AIREO43918 545 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 KERAO60938 352 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 NIPSNAP2O75323 286 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 TBX18O95935 607 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 SLC10A3P09131 477 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 JUNDP17535 347 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 WARSP23381 471 aaKnown RBP4.75□□□□□ -1.65
LIMA1-214ENST00000552783 CDKN2CP42773 168 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 GDF5P43026 501 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 HTR3AP46098 478 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 ST13P50502 369 aaKnown RBP4.75□□□□□ -1.65
LIMA1-214ENST00000552783 SLAMF1Q13291 335 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 EIF4EBP2Q13542 120 aaPredicted RBP4.75□□□□□ -1.65
LIMA1-214ENST00000552783 PWP1Q13610 501 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 AP5B1Q2VPB7 878 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 ZNF792Q3KQV3 632 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 UBXN11Q5T124 520 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 MANEALQ5VSG8 457 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 MARC1Q5VT66 337 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 RAP1GAP2Q684P5 730 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 ANKS6Q68DC2 871 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 SPATA19Q7Z5L4 167 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 RAB44Q7Z6P3 723 aaPredicted RBP4.75□□□□□ -1.65
LIMA1-214ENST00000552783 VTCN1Q7Z7D3 282 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 LACC1Q8IV20 430 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 PIANPQ8IYJ0 282 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 MICU2Q8IYU8 434 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 CADM2Q8N3J6 435 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 TCAIMQ8N3R3 496 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 CHAC2Q8WUX2 184 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 NCLNQ969V3 563 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 ZNF566Q969W8 418 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 FAM162AQ96A26 154 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 KIAA1191Q96A73 305 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 FYTTD1Q96QD9 318 aaKnown RBP4.75□□□□□ -1.65
LIMA1-214ENST00000552783 SIGLEC11Q96RL6 698 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 TMEM246Q9BRR3 403 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 INPP5KQ9BT40 448 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 BBS2Q9BXC9 721 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 FAM124BQ9H5Z6 455 aaPredicted RBP4.75□□□□□ -1.65
LIMA1-214ENST00000552783 GORASP2Q9H8Y8 452 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 ARNT2Q9HBZ2 717 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 CNGB3Q9NQW8 809 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 TRMT13Q9NUP7 481 aaKnown RBP4.75□□□□□ -1.65
LIMA1-214ENST00000552783 TMEM184CQ9NVA4 438 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 OSER1Q9NX31 292 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 PAQR5Q9NXK6 330 aaPredicted RBP4.75□□□□□ -1.65
LIMA1-214ENST00000552783 NIPSNAP3AQ9UFN0 247 aaPredicted RBP4.75□□□□□ -1.65
LIMA1-214ENST00000552783 SMIM35A0A1B0GVV1 85 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 ARL5CA6NH57 179 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 TLL1O43897 1013 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 TLR5O60602 858 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 FAM20BO75063 409 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 CREG1O75629 220 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 IRF1P10914 325 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 NAT1P18440 290 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 DNAJB2P25686 324 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 GRK4P32298 578 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 CLK1P49759 484 aaKnown RBP4.74□□□□□ -1.65
LIMA1-214ENST00000552783 ARPC4P59998 168 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 GPLD1P80108 840 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms