RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 PPM1LQ5SGD2 360 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 HECTD2Q5U5R9 776 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 TXNDC8Q6A555 127 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 LCTLQ6UWM7 567 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 TRIM72Q6ZMU5 477 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 Q6ZNX1 250 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 RHOUQ7L0Q8 258 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 BCDIN3DQ7Z5W3 292 aaKnown RBP3.77□□□□□ -1.81
LIMA1-208ENST00000551691 ADCK2Q7Z695 626 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 ARHGEF19Q8IW93 802 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 CCDC13Q8IYE1 715 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 NDUFAF2Q8N183 169 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 HDDC3Q8N4P3 179 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 MINDY1Q8N5J2 469 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 METTL13Q8N6R0 699 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 IL17RCQ8NAC3 791 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 SPC24Q8NBT2 197 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 PIGOQ8TEQ8 1089 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 NTN5Q8WTR8 489 aaPredicted RBP3.77□□□□□ -1.81
LIMA1-208ENST00000551691 HDAC7Q8WUI4 952 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 RLN3Q8WXF3 142 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 ASB10Q8WXI3 467 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 DNASE1L2Q92874 299 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 ZNF419Q96HQ0 510 aaPredicted RBP3.77□□□□□ -1.81
LIMA1-208ENST00000551691 NAF1Q96HR8 494 aaKnown RBP3.77□□□□□ -1.81
LIMA1-208ENST00000551691 INPP4AQ96PE3 977 aaPredicted RBP3.77□□□□□ -1.81
LIMA1-208ENST00000551691 DNAI2Q9GZS0 605 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 ACTR5Q9H9F9 607 aaPredicted RBP3.77□□□□□ -1.81
LIMA1-208ENST00000551691 CPNE5Q9HCH3 593 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 ZFP14Q9HCL3 533 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 SELENONQ9NZV5 590 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 PTGFRNQ9P2B2 879 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 NLKQ9UBE8 527 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 PI4KAP42356 2102 aa3.77□□□□□ -1.81
LIMA1-208ENST00000551691 CABIN1Q9Y6J0 2220 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 TRAV34A0A0B4J273 112 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 A0A1W2PQF6 199 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 OR2A25A4D2G3 310 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 URADA6NGE7 173 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 HEPACAM2A8MVW5 462 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 SPECC1L-ADORA2AF8WAN1 911 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 MITFO75030 526 aaPredicted RBP3.76□□□□□ -1.81
LIMA1-208ENST00000551691 TMCC1O94876 653 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 DDAH2O95865 285 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 EGFP01133 1207 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 SNHG28P0DPA3 235 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 VPREB1P12018 145 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 SELLP14151 372 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 STMN1P16949 149 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 PSMC3P17980 439 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 SFPQP23246 707 aaKnown RBP eCLIP3.76□□□□□ -1.81
LIMA1-208ENST00000551691 CIITAP33076 1130 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 RFC1P35251 1148 aaPredicted RBP3.76□□□□□ -1.81
LIMA1-208ENST00000551691 HNF4AP41235 474 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 GLUD2P49448 558 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 ZNF84P51523 738 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 CLCN3P51790 818 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 EFNA5P52803 228 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 SORDQ00796 357 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 RHAGQ02094 409 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 ALCAMQ13740 583 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 RPE65Q16518 533 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 ZNF805Q5CZA5 627 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 PMS2CLQ68D20 193 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 JADE1Q6IE81 842 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 CAVIN1Q6NZI2 390 aaKnown RBP3.76□□□□□ -1.81
LIMA1-208ENST00000551691 CEP85Q6P2H3 762 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 PLPPR4Q7Z2D5 763 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 EPHX4Q8IUS5 362 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 ARID3BQ8IVW6 561 aaPredicted RBP3.76□□□□□ -1.81
LIMA1-208ENST00000551691 HACE1Q8IYU2 909 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 RNF168Q8IYW5 571 aaPredicted RBP3.76□□□□□ -1.81
LIMA1-208ENST00000551691 FAM185AQ8N0U4 392 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 TMEM217Q8N7C4 229 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 DUSP19Q8WTR2 217 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 FAM162AQ96A26 154 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 FUBP1Q96AE4 644 aaKnown RBP3.76□□□□□ -1.81
LIMA1-208ENST00000551691 LENG9Q96B70 501 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 HDAC11Q96DB2 347 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 TMCO6Q96DC7 493 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 VCPIP1Q96JH7 1222 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 ZNF347Q96SE7 839 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 DESI2Q9BSY9 194 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 NUSAP1Q9BXS6 441 aaKnown RBP3.76□□□□□ -1.81
LIMA1-208ENST00000551691 API5Q9BZZ5 524 aaKnown RBP3.76□□□□□ -1.81
LIMA1-208ENST00000551691 OPA3Q9H6K4 179 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 COPS7BQ9H9Q2 264 aaPredicted RBP3.76□□□□□ -1.81
LIMA1-208ENST00000551691 CWC15Q9P013 229 aaKnown RBP3.76□□□□□ -1.81
LIMA1-208ENST00000551691 SH3BP4Q9P0V3 963 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 PACSIN3Q9UKS6 424 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 CMAHPQ9Y471 501 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 CLDN16Q9Y5I7 305 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 CELSR1Q9NYQ6 3014 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 OTOGQ6ZRI0 2925 aa3.76□□□□□ -1.81
LIMA1-208ENST00000551691 ADGRG4Q8IZF6 3080 aa3.75□□□□□ -1.81
LIMA1-208ENST00000551691 CENPVL1A0A0U1RR11 272 aa3.75□□□□□ -1.81
LIMA1-208ENST00000551691 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP3.75□□□□□ -1.81
LIMA1-208ENST00000551691 PIPSLA2A3N6 862 aa3.75□□□□□ -1.81
LIMA1-208ENST00000551691 WDR27A2RRH5 827 aa3.75□□□□□ -1.81
LIMA1-208ENST00000551691 MYBPHLA2RUH7 354 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms