RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 ZNF547Q8IVP9 402 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 TRIM59Q8IWR1 403 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 ARHGAP12Q8IWW6 846 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 PHC2Q8IXK0 858 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 DMRTC2Q8IXT2 367 aaPredicted RBP4.59□□□□□ -1.67
LIMS1-214ENST00000542845 ZZZ3Q8IYH5 903 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 PRSS58Q8IYP2 241 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 VWA5B2Q8N398 1253 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 NPWQ8N729 165 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 GPR26Q8NDV2 337 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 BRIX1Q8TDN6 353 aaKnown RBP4.59□□□□□ -1.67
LIMS1-214ENST00000542845 STK35Q8TDR2 534 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 ZFPM2Q8WW38 1151 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 NELFBQ8WX92 580 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 CENPIQ92674 756 aaPredicted RBP4.59□□□□□ -1.67
LIMS1-214ENST00000542845 GLYATL1Q969I3 302 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 GAL3ST3Q96A11 431 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 C8orf44Q96CB5 159 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 C12orf66Q96MD2 445 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 ALPK1Q96QP1 1244 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 NRTNQ99748 197 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 MESP1Q9BRJ9 268 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 TIMM29Q9BSF4 260 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 RNF32Q9H0A6 362 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 WWP1Q9H0M0 922 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 VPS16Q9H269 839 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 GOLPH3LQ9H4A5 285 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 KLHL1Q9NR64 748 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 C1GALT1Q9NS00 363 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 SEPT11Q9NVA2 429 aaKnown RBP4.59□□□□□ -1.67
LIMS1-214ENST00000542845 STMN3Q9NZ72 180 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 PCSK1NQ9UHG2 260 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 SOX13Q9UN79 622 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 AP4E1Q9UPM8 1137 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 CTNND2Q9UQB3 1225 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 PPIL1Q9Y3C6 166 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 MAP1AP78559 2803 aaPredicted RBP4.59□□□□□ -1.68
LIMS1-214ENST00000542845 GTF3C1Q12789 2109 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 VPS13CQ709C8 3753 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 PRAMEF27A3QJZ7 478 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 OR2AG2A6NM03 316 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 A8MUI8 341 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 FAM171A2A8MVW0 826 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 E9PLN8 166 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 PRRG2O14669 202 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 HCRTR1O43613 425 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 VEGFDO43915 354 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 CTAG2O75638 210 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 SMC2O95347 1197 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 PRAMEF1O95521 474 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 TSPAN12O95859 305 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 MT-CYBP00156 380 aaPredicted RBP4.58□□□□□ -1.68
LIMS1-214ENST00000542845 POLBP06746 335 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 HOXD4P09016 255 aaPredicted RBP4.58□□□□□ -1.68
LIMS1-214ENST00000542845 GSTP1P09211 210 aaKnown RBP4.58□□□□□ -1.68
LIMS1-214ENST00000542845 PIRTP0C851 137 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 MYBL2P10244 700 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 MTHFD1P11586 935 aaKnown RBP4.58□□□□□ -1.68
LIMS1-214ENST00000542845 MX2P20592 715 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 PON1P27169 355 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 CDH5P33151 784 aaPredicted RBP4.58□□□□□ -1.68
LIMS1-214ENST00000542845 HSPA9P38646 679 aaKnown RBP4.58□□□□□ -1.68
LIMS1-214ENST00000542845 YBX1P67809 324 aaKnown RBP4.58□□□□□ -1.68
LIMS1-214ENST00000542845 NOMO3P69849 1222 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 DSC2Q02487 901 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 ZNF33BQ06732 778 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 TMEM115Q12893 351 aaPredicted RBP4.58□□□□□ -1.68
LIMS1-214ENST00000542845 KEAP1Q14145 624 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 INAQ16352 499 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 EXOC3L4Q17RC7 722 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 KHDC1Q4VXA5 237 aaKnown RBP4.58□□□□□ -1.68
LIMS1-214ENST00000542845 ZNF766Q5HY98 468 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 RHBDD2Q6NTF9 364 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 TMEM220Q6QAJ8 160 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 WASH2PQ6VEQ5 465 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 C16orf47Q6ZP98 133 aaPredicted RBP4.58□□□□□ -1.68
LIMS1-214ENST00000542845 FAM83HQ6ZRV2 1179 aaPredicted RBP4.58□□□□□ -1.68
LIMS1-214ENST00000542845 RFX8Q6ZV50 586 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 ARCQ7LC44 396 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 VN1R5Q7Z5H4 357 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 TRIM73Q86UV7 250 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 AMZ2Q86W34 360 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 CCDC71Q8IV32 467 aaPredicted RBP4.58□□□□□ -1.68
LIMS1-214ENST00000542845 KBTBD2Q8IY47 623 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 FAM71AQ8IYT1 594 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 METTL27Q8N6F8 245 aaPredicted RBP4.58□□□□□ -1.68
LIMS1-214ENST00000542845 AMER2Q8N7J2 671 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 OR11G2Q8NGC1 345 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 NAT14Q8WUY8 206 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 ZDHHC19Q8WVZ1 309 aaPredicted RBP4.58□□□□□ -1.68
LIMS1-214ENST00000542845 LCN9Q8WX39 176 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 HAS2Q92819 552 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 SMARCE1Q969G3 411 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 CCDC34Q96HJ3 373 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 DHTKD1Q96HY7 919 aaPredicted RBP4.58□□□□□ -1.68
LIMS1-214ENST00000542845 VPS50Q96JG6 964 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 ZNF599Q96NL3 588 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 TREX2Q9BQ50 279 aaPredicted RBP4.58□□□□□ -1.68
LIMS1-214ENST00000542845 VKORC1Q9BQB6 163 aa4.58□□□□□ -1.68
LIMS1-214ENST00000542845 SRMSQ9H3Y6 488 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms