RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 SPO11Q9Y5K1 396 aa8.2□□□□□ -1.1
CHD4-208ENST00000540960 PRR19A6NJB7 356 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 C1QTNF3-AMACRE9PGA6 284 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 STX16-NPEPL1H3BU86 382 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 MYO1CO00159 1063 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 STX16O14662 325 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 SMAD6O43541 496 aaKnown RBP8.19□□□□□ -1.1
CHD4-208ENST00000540960 SNX2O60749 519 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 RNASEH1O60930 286 aaKnown RBP8.19□□□□□ -1.1
CHD4-208ENST00000540960 KERAO60938 352 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 PRAMEF1O95521 474 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 CHEK2O96017 543 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 EPHX1P07099 455 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 PDHA1P08559 390 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 OR56A5P0C7T3 313 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 LIPCP11150 499 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 ZNF37AP17032 561 aaPredicted RBP8.19□□□□□ -1.1
CHD4-208ENST00000540960 CHRM3P20309 590 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 PRDX6P30041 224 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 VIPR1P32241 457 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 PIK3CGP48736 1102 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 AQP5P55064 265 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 PPARDQ03181 441 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 KLRB1Q12918 225 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 NFATC2Q13469 925 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 CSHL1Q14406 222 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 ZNF234Q14588 700 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 GEN1Q17RS7 908 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 ZXDCQ2QGD7 858 aaPredicted RBP8.19□□□□□ -1.1
CHD4-208ENST00000540960 ZNF284Q2VY69 593 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 TECRLQ5HYJ1 363 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 SEL1L3Q68CR1 1132 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 MACC1Q6ZN28 852 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 CLNKQ7Z7G1 428 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 ADIPOR2Q86V24 386 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 MCEMP1Q8IX19 187 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 CENPLQ8N0S6 344 aaPredicted RBP8.19□□□□□ -1.1
CHD4-208ENST00000540960 ZNF366Q8N895 744 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 OR4C6Q8NH72 309 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 IFI44Q8TCB0 444 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 GRIN3AQ8TCU5 1115 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 JPH3Q8WXH2 748 aaPredicted RBP8.19□□□□□ -1.1
CHD4-208ENST00000540960 NXNL1Q96CM4 212 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 KLHL29Q96CT2 875 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 L3HYPDHQ96EM0 354 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 GPR78Q96P69 363 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 COPS8Q99627 209 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 ZSCAN5AQ9BUG6 496 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 ZCCHC2Q9C0B9 1178 aaKnown RBP8.19□□□□□ -1.1
CHD4-208ENST00000540960 CIPCQ9C0C6 399 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 ZDHHC6Q9H6R6 413 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 ASB8Q9H765 288 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 ERVMER34-1Q9H9K5 563 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 SMOXQ9NWM0 555 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 ZDHHC3Q9NYG2 299 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 PLK2Q9NYY3 685 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 IL1RAPL1Q9NZN1 696 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 SLC17A6Q9P2U8 582 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 IL36AQ9UHA7 158 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 FKBPLQ9UIM3 349 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 LNPEPQ9UIQ6 1025 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 INTS6Q9UL03 887 aaKnown RBP8.19□□□□□ -1.1
CHD4-208ENST00000540960 DNAJC16Q9Y2G8 782 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 CRYL1Q9Y2S2 319 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 DHRS7Q9Y394 339 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 PCDHGA7Q9Y5G6 932 aa8.19□□□□□ -1.1
CHD4-208ENST00000540960 ZNF106Q9H2Y7 1883 aaKnown RBP8.19□□□□□ -1.1
CHD4-208ENST00000540960 TRBV5-4A0A0C4DH59 114 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 TTC24A2A3L6 582 aaPredicted RBP8.18□□□□□ -1.1
CHD4-208ENST00000540960 KLHL33A6NCF5 533 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 TARM1B6A8C7 271 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 K7ERQ8 282 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 AGRPO00253 132 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 HNRNPRO43390 633 aaKnown RBP8.18□□□□□ -1.1
CHD4-208ENST00000540960 DLX3O60479 287 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 UBOX5O94941 541 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 GP1BAP07359 652 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 PIRTP0C851 137 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 ESRRAP11474 423 aaPredicted RBP8.18□□□□□ -1.1
CHD4-208ENST00000540960 TFEBP19484 476 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 FMO4P31512 558 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 SLC8A1P32418 973 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 MLLT3P42568 568 aaPredicted RBP8.18□□□□□ -1.1
CHD4-208ENST00000540960 NAGLUP54802 743 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 RPS14P62263 151 aaKnown RBP8.18□□□□□ -1.1
CHD4-208ENST00000540960 HERVK_113P63132 956 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 PLOD1Q02809 727 aaPredicted RBP8.18□□□□□ -1.1
CHD4-208ENST00000540960 MRPL49Q13405 166 aaKnown RBP8.18□□□□□ -1.1
CHD4-208ENST00000540960 ELAVL3Q14576 367 aaKnown RBP8.18□□□□□ -1.1
CHD4-208ENST00000540960 IHHQ14623 411 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 MAPRE2Q15555 327 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 DNAL1Q4LDG9 190 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 LDLRAP1Q5SW96 308 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 C6orf163Q5TEZ5 329 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 CGB2Q6NT52 195 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 DPY19L3Q6ZPD9 716 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 ZNF765Q7L2R6 523 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 LYSMD3Q7Z3D4 306 aa8.18□□□□□ -1.1
CHD4-208ENST00000540960 MTDHQ86UE4 582 aaKnown RBP8.18□□□□□ -1.1
CHD4-208ENST00000540960 NLRP8Q86W28 1048 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms