RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 TUBB2AQ13885 445 aa2.54□□□□□ -2
CD44-238ENST00000534296 IL11RAQ14626 422 aa2.54□□□□□ -2
CD44-238ENST00000534296 COG2Q14746 738 aa2.54□□□□□ -2
CD44-238ENST00000534296 ZC2HC1BQ5TFG8 222 aa2.54□□□□□ -2
CD44-238ENST00000534296 TRIM65Q6PJ69 517 aa2.54□□□□□ -2
CD44-238ENST00000534296 PET117Q6UWS5 81 aa2.54□□□□□ -2
CD44-238ENST00000534296 COMMD2Q86X83 199 aa2.54□□□□□ -2
CD44-238ENST00000534296 CDK20Q8IZL9 346 aa2.54□□□□□ -2
CD44-238ENST00000534296 RYBPQ8N488 228 aaPredicted RBP2.54□□□□□ -2
CD44-238ENST00000534296 DNAJC22Q8N4W6 341 aa2.54□□□□□ -2
CD44-238ENST00000534296 TC2NQ8N9U0 490 aa2.54□□□□□ -2
CD44-238ENST00000534296 SLC4A11Q8NBS3 891 aa2.54□□□□□ -2
CD44-238ENST00000534296 MRGPRDQ8TDS7 321 aa2.54□□□□□ -2
CD44-238ENST00000534296 SUSD6Q92537 303 aa2.54□□□□□ -2
CD44-238ENST00000534296 DAZLQ92904 295 aaKnown RBP2.54□□□□□ -2
CD44-238ENST00000534296 CENPTQ96BT3 561 aa2.54□□□□□ -2
CD44-238ENST00000534296 PGAP3Q96FM1 320 aaPredicted RBP2.54□□□□□ -2
CD44-238ENST00000534296 SIPA1Q96FS4 1042 aa2.54□□□□□ -2
CD44-238ENST00000534296 SGK494Q96LW2 274 aa2.54□□□□□ -2
CD44-238ENST00000534296 CFAP57Q96MR6 1250 aa2.54□□□□□ -2
CD44-238ENST00000534296 OR6C1Q96RD1 312 aa2.54□□□□□ -2
CD44-238ENST00000534296 MYADMQ96S97 322 aa2.54□□□□□ -2
CD44-238ENST00000534296 OPRPNQ99935 248 aaPredicted RBP2.54□□□□□ -2
CD44-238ENST00000534296 LMF2Q9BU23 707 aaKnown RBP2.54□□□□□ -2
CD44-238ENST00000534296 TRAF4Q9BUZ4 470 aaPredicted RBP2.54□□□□□ -2
CD44-238ENST00000534296 TUBB2BQ9BVA1 445 aa2.54□□□□□ -2
CD44-238ENST00000534296 NUP85Q9BW27 656 aa2.54□□□□□ -2
CD44-238ENST00000534296 GOLPH3LQ9H4A5 285 aa2.54□□□□□ -2
CD44-238ENST00000534296 NOL11Q9H8H0 719 aaKnown RBP2.54□□□□□ -2
CD44-238ENST00000534296 ZWILCHQ9H900 591 aa2.54□□□□□ -2
CD44-238ENST00000534296 TBC1D17Q9HA65 648 aa2.54□□□□□ -2
CD44-238ENST00000534296 FGF22Q9HCT0 170 aa2.54□□□□□ -2
CD44-238ENST00000534296 SIX2Q9NPC8 291 aa2.54□□□□□ -2
CD44-238ENST00000534296 EQTNQ9NQ60 294 aa2.54□□□□□ -2
CD44-238ENST00000534296 HAO2Q9NYQ3 351 aa2.54□□□□□ -2
CD44-238ENST00000534296 ANAPC2Q9UJX6 822 aa2.54□□□□□ -2
CD44-238ENST00000534296 MRPS28Q9Y2Q9 187 aaKnown RBP2.54□□□□□ -2
CD44-238ENST00000534296 SPIN1Q9Y657 262 aaPredicted RBP2.54□□□□□ -2
CD44-238ENST00000534296 ARHGEF40Q8TER5 1519 aa2.53□□□□□ -2
CD44-238ENST00000534296 PRSS51A0A1B0GVH4 220 aa2.53□□□□□ -2
CD44-238ENST00000534296 A0A1W2PN81 502 aa2.53□□□□□ -2
CD44-238ENST00000534296 NDUFAF8A1L188 74 aa2.53□□□□□ -2
CD44-238ENST00000534296 NR5A2O00482 541 aa2.53□□□□□ -2
CD44-238ENST00000534296 MED24O75448 989 aa2.53□□□□□ -2
CD44-238ENST00000534296 CEACAM8P31997 349 aaPredicted RBP2.53□□□□□ -2
CD44-238ENST00000534296 CHRNA7P36544 502 aa2.53□□□□□ -2
CD44-238ENST00000534296 THOP1P52888 689 aa2.53□□□□□ -2
CD44-238ENST00000534296 CDH13P55290 713 aa2.53□□□□□ -2
CD44-238ENST00000534296 IRX1P78414 480 aaPredicted RBP2.53□□□□□ -2
CD44-238ENST00000534296 PRKCZQ05513 592 aa2.53□□□□□ -2
CD44-238ENST00000534296 SPOCK1Q08629 439 aa2.53□□□□□ -2
CD44-238ENST00000534296 PTPRCAPQ14761 206 aa2.53□□□□□ -2
CD44-238ENST00000534296 SLC1A5Q15758 541 aa2.53□□□□□ -2
CD44-238ENST00000534296 KYNUQ16719 465 aa2.53□□□□□ -2
CD44-238ENST00000534296 C14orf177Q52M58 125 aa2.53□□□□□ -2
CD44-238ENST00000534296 FFAR4Q5NUL3 377 aa2.53□□□□□ -2
CD44-238ENST00000534296 FAM53AQ6NSI3 398 aaPredicted RBP2.53□□□□□ -2
CD44-238ENST00000534296 FIGLAQ6QHK4 219 aa2.53□□□□□ -2
CD44-238ENST00000534296 ZBTB49Q6ZSB9 765 aa2.53□□□□□ -2
CD44-238ENST00000534296 TMPRSS11FQ6ZWK6 438 aa2.53□□□□□ -2
CD44-238ENST00000534296 CENPVQ7Z7K6 275 aaPredicted RBP2.53□□□□□ -2
CD44-238ENST00000534296 PHLDB2Q86SQ0 1253 aa2.53□□□□□ -2
CD44-238ENST00000534296 VSIG1Q86XK7 387 aa2.53□□□□□ -2
CD44-238ENST00000534296 CEP57Q86XR8 500 aa2.53□□□□□ -2
CD44-238ENST00000534296 FAM114A1Q8IWE2 563 aa2.53□□□□□ -2
CD44-238ENST00000534296 RAB42Q8N4Z0 105 aa2.53□□□□□ -2
CD44-238ENST00000534296 ZNF611Q8N823 705 aa2.53□□□□□ -2
CD44-238ENST00000534296 IQUBQ8NA54 791 aa2.53□□□□□ -2
CD44-238ENST00000534296 TRIM58Q8NG06 486 aa2.53□□□□□ -2
CD44-238ENST00000534296 OR10S1Q8NGN2 331 aa2.53□□□□□ -2
CD44-238ENST00000534296 MOSPD2Q8NHP6 518 aa2.53□□□□□ -2
CD44-238ENST00000534296 CFAP61Q8NHU2 1237 aa2.53□□□□□ -2
CD44-238ENST00000534296 THOC1Q96FV9 657 aaKnown RBP2.53□□□□□ -2
CD44-238ENST00000534296 LINC00479Q96M42 142 aa2.53□□□□□ -2
CD44-238ENST00000534296 ZNF582Q96NG8 517 aaPredicted RBP2.53□□□□□ -2
CD44-238ENST00000534296 EGFL8Q99944 293 aa2.53□□□□□ -2
CD44-238ENST00000534296 RTP3Q9BQQ7 232 aa2.53□□□□□ -2
CD44-238ENST00000534296 MCRIP2Q9BUT9 160 aaKnown RBP2.53□□□□□ -2
CD44-238ENST00000534296 PRRG4Q9BZD6 226 aa2.53□□□□□ -2
CD44-238ENST00000534296 EGLN1Q9GZT9 426 aa2.53□□□□□ -2
CD44-238ENST00000534296 OR10A4Q9H209 315 aa2.53□□□□□ -2
CD44-238ENST00000534296 GDE1Q9NZC3 331 aa2.53□□□□□ -2
CD44-238ENST00000534296 OSGIN1Q9UJX0 560 aa2.53□□□□□ -2
CD44-238ENST00000534296 NME7Q9Y5B8 376 aa2.53□□□□□ -2
CD44-238ENST00000534296 PRSS21Q9Y6M0 314 aa2.53□□□□□ -2
CD44-238ENST00000534296 IGHV4-61A0A0C4DH41 118 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 A0A1B0GU03 582 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 A0A1W2PR77 199 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 HYKKA2RU49 373 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 MEIOCA2RUB1 952 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 ANKUB1A6NFN9 424 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 H7C0S8 307 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 TADA2AO75478 443 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 PRKRAO75569 313 aaKnown RBP2.52□□□□□ -2.01
CD44-238ENST00000534296 TRMUO75648 421 aaKnown RBP2.52□□□□□ -2.01
CD44-238ENST00000534296 PSMD10O75832 226 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 GCNT3O95395 438 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 PIGNO95427 931 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 C22orf31O95567 290 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 TBX6O95947 436 aaPredicted RBP2.52□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms