RNA–Protein interactions for RNA: ENST00000492650.1

VPS36-205, Transcript of vacuolar protein sorting 36 homolog, human

TSL 5

Gene VPS36, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS36-205	ENST00000492650	AVIL	O75366	819 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	TACC1	O75410	805 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	SLCO2B1	O94956	709 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	SEC31A	O94979	1220 aa	Known RBP	3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	LETM1	O95202	739 aa	Predicted RBP	3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	ALPP	P05187	535 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	CYC1	P08574	325 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	ALPPL2	P10696	532 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	PDHB	P11177	359 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	S1PR1	P21453	382 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	PRKCI	P41743	596 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	CAMLG	P49069	296 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	CAMP	P49913	170 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	KHK	P50053	298 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	NR0B1	P51843	470 aa	Known RBP	3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	CASP9	P55211	416 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	SNU13	P55769	128 aa	Known RBP	3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	SH3BGR	P55822	239 aa	Predicted RBP	3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	KIAA1024L	P59773	190 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	ASIC1	P78348	528 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	PDE1B	Q01064	536 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	TRA2A	Q13595	282 aa	Known RBP eCLIP	3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	RPS6KA1	Q15418	735 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	TCTN1	Q2MV58	587 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	EIF2S3L	Q2VIR3	472 aa	Known RBP	3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	TMEM30B	Q3MIR4	351 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	CCDC183	Q5T5S1	534 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	ETFRF1	Q6IPR1	90 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	TRNP1	Q6NT89	227 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	ARHGAP11A	Q6P4F7	1023 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	GLDN	Q6ZMI3	551 aa	Predicted RBP	3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	ZNF852	Q6ZMS4	543 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	OTUD6A	Q7L8S5	288 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	MIER3	Q7Z3K6	550 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	CAMKMT	Q7Z624	323 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	EGFL6	Q8IUX8	553 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	SFRP1	Q8N474	314 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	C11orf65	Q8NCR3	313 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	BEST2	Q8NFU1	509 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	CCDC110	Q8TBZ0	833 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	SLC13A3	Q8WWT9	602 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	PRCC	Q92733	491 aa	Predicted RBP	3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	LRRC59	Q96AG4	307 aa	Known RBP	3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	MMAB	Q96EY8	250 aa	Predicted RBP	3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	LINC00615	Q96LM1	132 aa	Predicted RBP	3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	NEK1	Q96PY6	1258 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	F2RL3	Q96RI0	385 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	GAL3ST4	Q96RP7	486 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	INTS14	Q96SY0	518 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	GAD1	Q99259	594 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	LRRC1	Q9BTT6	524 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	UTP14A	Q9BVJ6	771 aa	Known RBP	3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	HRH4	Q9H3N8	390 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	DENND2D	Q9H6A0	471 aa	Predicted RBP	3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	ESRP2	Q9H6T0	727 aa	Known RBP	3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	MKKS	Q9NPJ1	570 aa	Predicted RBP	3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	GPR108	Q9NPR9	543 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	SLC35D1	Q9NTN3	355 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	GDE1	Q9NZC3	331 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	FAM96B	Q9Y3D0	163 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	STON1	Q9Y6Q2	735 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	ZNF644	Q9H582	1327 aa	Predicted RBP	3.16	□□□□□ -1.9
VPS36-205	ENST00000492650		A0A087WV48	116 aa		3.15	□□□□□ -1.91
VPS36-205	ENST00000492650	GOLGA6L9	A6NEM1	432 aa		3.15	□□□□□ -1.91
VPS36-205	ENST00000492650	TMEM202	A6NGA9	273 aa		3.15	□□□□□ -1.91
VPS36-205	ENST00000492650	SLC9B1P1	A6NJY1	282 aa		3.15	□□□□□ -1.91
VPS36-205	ENST00000492650	LRRC53	A6NM62	1247 aa		3.15	□□□□□ -1.91
VPS36-205	ENST00000492650	ANXA2P2	A6NMY6	339 aa		3.15	□□□□□ -1.91
VPS36-205	ENST00000492650	GPR89A	B7ZAQ6	455 aa		3.15	□□□□□ -1.91
VPS36-205	ENST00000492650	FAM86B1	E9PN63	330 aa		3.15	□□□□□ -1.91
VPS36-205	ENST00000492650	SPRY1	O43609	319 aa	Predicted RBP	3.15	□□□□□ -1.91
VPS36-205	ENST00000492650	MITF	O75030	526 aa	Predicted RBP	3.15	□□□□□ -1.91
VPS36-205	ENST00000492650	TPPP	O94811	219 aa		3.15	□□□□□ -1.91
VPS36-205	ENST00000492650	GALT	P07902	379 aa		3.15	□□□□□ -1.91
VPS36-205	ENST00000492650	SRPRA	P08240	638 aa	Known RBP	3.15	□□□□□ -1.91
VPS36-205	ENST00000492650	GPR89B	P0CG08	455 aa		3.15	□□□□□ -1.91
VPS36-205	ENST00000492650	UROS	P10746	265 aa		3.15	□□□□□ -1.91
VPS36-205	ENST00000492650	GHR	P10912	638 aa		3.15	□□□□□ -1.91
VPS36-205	ENST00000492650	MYOD1	P15172	320 aa		3.15	□□□□□ -1.91
VPS36-205	ENST00000492650	PON1	P27169	355 aa		3.15	□□□□□ -1.91
VPS36-205	ENST00000492650	ALDH4A1	P30038	563 aa		3.15	□□□□□ -1.91
VPS36-205	ENST00000492650	BDKRB2	P30411	391 aa		3.15	□□□□□ -1.91
VPS36-205	ENST00000492650	ADAR	P55265	1226 aa	Known RBP	3.15	□□□□□ -1.91
VPS36-205	ENST00000492650	IK	Q13123	557 aa	Predicted RBP	3.15	□□□□□ -1.91
VPS36-205	ENST00000492650	HIST2H2AC	Q16777	129 aa	Predicted RBP	3.15	□□□□□ -1.91
VPS36-205	ENST00000492650	KRT24	Q2M2I5	525 aa		3.15	□□□□□ -1.91
VPS36-205	ENST00000492650	TWISTNB	Q3B726	338 aa	Predicted RBP	3.15	□□□□□ -1.91
VPS36-205	ENST00000492650	ZSCAN23	Q3MJ62	389 aa		3.15	□□□□□ -1.91
VPS36-205	ENST00000492650	RABL6	Q3YEC7	729 aa	Predicted RBP	3.15	□□□□□ -1.91
VPS36-205	ENST00000492650	CCDC40	Q4G0X9	1142 aa		3.15	□□□□□ -1.91
VPS36-205	ENST00000492650	IGSF11	Q5DX21	431 aa		3.15	□□□□□ -1.91
VPS36-205	ENST00000492650	SGO1	Q5FBB7	561 aa		3.15	□□□□□ -1.91
VPS36-205	ENST00000492650	STXBP5	Q5T5C0	1151 aa		3.15	□□□□□ -1.91
VPS36-205	ENST00000492650	CES4A	Q5XG92	561 aa		3.15	□□□□□ -1.91
VPS36-205	ENST00000492650	SLC25A24	Q6NUK1	477 aa		3.15	□□□□□ -1.91
VPS36-205	ENST00000492650	ZCCHC12	Q6PEW1	402 aa		3.15	□□□□□ -1.91
VPS36-205	ENST00000492650	C16orf87	Q6PH81	154 aa		3.15	□□□□□ -1.91
VPS36-205	ENST00000492650	KCTD18	Q6PI47	426 aa	Predicted RBP	3.15	□□□□□ -1.91
VPS36-205	ENST00000492650	FBXO46	Q6PJ61	603 aa	Predicted RBP	3.15	□□□□□ -1.91
VPS36-205	ENST00000492650	TSSK4	Q6SA08	328 aa		3.15	□□□□□ -1.91

Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms