RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 ANKRD23Q86SG2 305 aa4.45□□□□□ -1.7
HMGB1P38-201ENST00000490557 LSMEM1Q8N8F7 131 aa4.45□□□□□ -1.7
HMGB1P38-201ENST00000490557 ZNF248Q8NDW4 579 aa4.45□□□□□ -1.7
HMGB1P38-201ENST00000490557 FAM76AQ8TAV0 307 aa4.45□□□□□ -1.7
HMGB1P38-201ENST00000490557 THOC1Q96FV9 657 aaKnown RBP4.45□□□□□ -1.7
HMGB1P38-201ENST00000490557 BARHL1Q9BZE3 327 aa4.45□□□□□ -1.7
HMGB1P38-201ENST00000490557 ARRDC1-AS1Q9H2J1 176 aa4.45□□□□□ -1.7
HMGB1P38-201ENST00000490557 SIX2Q9NPC8 291 aa4.45□□□□□ -1.7
HMGB1P38-201ENST00000490557 SCRT2Q9NQ03 307 aa4.45□□□□□ -1.7
HMGB1P38-201ENST00000490557 DDX43Q9NXZ2 648 aaKnown RBP4.45□□□□□ -1.7
HMGB1P38-201ENST00000490557 MTUS1Q9ULD2 1270 aa4.45□□□□□ -1.7
HMGB1P38-201ENST00000490557 WDR81Q562E7 1941 aa4.44□□□□□ -1.7
HMGB1P38-201ENST00000490557 ZNF197O14709 1029 aa4.44□□□□□ -1.7
HMGB1P38-201ENST00000490557 ATP6V0E1O15342 81 aa4.44□□□□□ -1.7
HMGB1P38-201ENST00000490557 EDIL3O43854 480 aa4.44□□□□□ -1.7
HMGB1P38-201ENST00000490557 OR10H2O60403 315 aa4.44□□□□□ -1.7
HMGB1P38-201ENST00000490557 TADA2AO75478 443 aa4.44□□□□□ -1.7
HMGB1P38-201ENST00000490557 GGPS1O95749 300 aa4.44□□□□□ -1.7
HMGB1P38-201ENST00000490557 WDPCPO95876 746 aa4.44□□□□□ -1.7
HMGB1P38-201ENST00000490557 DNTTP04053 509 aa4.44□□□□□ -1.7
HMGB1P38-201ENST00000490557 RPN1P04843 607 aaKnown RBP4.44□□□□□ -1.7
HMGB1P38-201ENST00000490557 HMBSP08397 361 aa4.44□□□□□ -1.7
HMGB1P38-201ENST00000490557 DANCRP0C864 163 aa4.44□□□□□ -1.7
HMGB1P38-201ENST00000490557 CPT2P23786 658 aa4.44□□□□□ -1.7
HMGB1P38-201ENST00000490557 EEF1DP29692 281 aaKnown RBP4.44□□□□□ -1.7
HMGB1P38-201ENST00000490557 RAB28P51157 221 aa4.44□□□□□ -1.7
HMGB1P38-201ENST00000490557 CDR2Q01850 454 aa4.44□□□□□ -1.7
HMGB1P38-201ENST00000490557 GPR17Q13304 367 aa4.44□□□□□ -1.7
HMGB1P38-201ENST00000490557 PTPRCAPQ14761 206 aa4.44□□□□□ -1.7
HMGB1P38-201ENST00000490557 ODF4Q2M2E3 257 aa4.44□□□□□ -1.7
HMGB1P38-201ENST00000490557 C1QTNF12Q5T7M4 302 aa4.44□□□□□ -1.7
HMGB1P38-201ENST00000490557 ARHGAP11AQ6P4F7 1023 aa4.44□□□□□ -1.7
HMGB1P38-201ENST00000490557 ZNF449Q6P9G9 518 aa4.44□□□□□ -1.7
HMGB1P38-201ENST00000490557 ZNF790Q6PG37 636 aa4.44□□□□□ -1.7
HMGB1P38-201ENST00000490557 ARHGAP22Q7Z5H3 698 aa4.44□□□□□ -1.7
HMGB1P38-201ENST00000490557 TMEM139Q8IV31 216 aa4.44□□□□□ -1.7
HMGB1P38-201ENST00000490557 SLC4A11Q8NBS3 891 aa4.44□□□□□ -1.7
HMGB1P38-201ENST00000490557 NPEPL1Q8NDH3 523 aa4.44□□□□□ -1.7
HMGB1P38-201ENST00000490557 FGFBP3Q8TAT2 258 aa4.44□□□□□ -1.7
HMGB1P38-201ENST00000490557 GRHL3Q8TE85 626 aa4.44□□□□□ -1.7
HMGB1P38-201ENST00000490557 SUSD6Q92537 303 aa4.44□□□□□ -1.7
HMGB1P38-201ENST00000490557 HDAC11Q96DB2 347 aa4.44□□□□□ -1.7
HMGB1P38-201ENST00000490557 PGAP3Q96FM1 320 aaPredicted RBP4.44□□□□□ -1.7
HMGB1P38-201ENST00000490557 SENP5Q96HI0 755 aaPredicted RBP4.44□□□□□ -1.7
HMGB1P38-201ENST00000490557 CNDP2Q96KP4 475 aaKnown RBP4.44□□□□□ -1.7
HMGB1P38-201ENST00000490557 ALDH8A1Q9H2A2 487 aaPredicted RBP4.44□□□□□ -1.7
HMGB1P38-201ENST00000490557 RABEP2Q9H5N1 569 aa4.44□□□□□ -1.7
HMGB1P38-201ENST00000490557 ABT1Q9ULW3 272 aaKnown RBP4.44□□□□□ -1.7
HMGB1P38-201ENST00000490557 RIPK3Q9Y572 518 aa4.44□□□□□ -1.7
HMGB1P38-201ENST00000490557 SOS1Q07889 1333 aaPredicted RBP4.44□□□□□ -1.7
HMGB1P38-201ENST00000490557 GIMAP1-GIMAP5A0A087WTJ2 511 aa4.43□□□□□ -1.7
HMGB1P38-201ENST00000490557 IGHV4-61A0A0C4DH41 118 aa4.43□□□□□ -1.7
HMGB1P38-201ENST00000490557 SLC22A2O15244 555 aa4.43□□□□□ -1.7
HMGB1P38-201ENST00000490557 DIAPH2O60879 1101 aa4.43□□□□□ -1.7
HMGB1P38-201ENST00000490557 TRMUO75648 421 aaKnown RBP4.43□□□□□ -1.7
HMGB1P38-201ENST00000490557 TOMM70O94826 608 aa4.43□□□□□ -1.7
HMGB1P38-201ENST00000490557 EML2O95834 649 aa4.43□□□□□ -1.7
HMGB1P38-201ENST00000490557 IGHV4-59P01825 116 aa4.43□□□□□ -1.7
HMGB1P38-201ENST00000490557 HSP90AB1P08238 724 aaKnown RBP4.43□□□□□ -1.7
HMGB1P38-201ENST00000490557 RAB40ALP0C0E4 278 aa4.43□□□□□ -1.7
HMGB1P38-201ENST00000490557 PATE4P0C8F1 98 aa4.43□□□□□ -1.7
HMGB1P38-201ENST00000490557 HSPA8P11142 646 aaKnown RBP4.43□□□□□ -1.7
HMGB1P38-201ENST00000490557 CA4P22748 312 aa4.43□□□□□ -1.7
HMGB1P38-201ENST00000490557 CA6P23280 308 aa4.43□□□□□ -1.7
HMGB1P38-201ENST00000490557 PTPN3P26045 913 aa4.43□□□□□ -1.7
HMGB1P38-201ENST00000490557 MC5RP33032 325 aa4.43□□□□□ -1.7
HMGB1P38-201ENST00000490557 GLIPR1P48060 266 aa4.43□□□□□ -1.7
HMGB1P38-201ENST00000490557 RBM39Q14498 530 aaKnown RBP4.43□□□□□ -1.7
HMGB1P38-201ENST00000490557 CRY2Q49AN0 593 aa4.43□□□□□ -1.7
HMGB1P38-201ENST00000490557 ZBTB49Q6ZSB9 765 aa4.43□□□□□ -1.7
HMGB1P38-201ENST00000490557 SLC16A9Q7RTY1 509 aa4.43□□□□□ -1.7
HMGB1P38-201ENST00000490557 PLPPR4Q7Z2D5 763 aa4.43□□□□□ -1.7
HMGB1P38-201ENST00000490557 NUDT13Q86X67 352 aa4.43□□□□□ -1.7
HMGB1P38-201ENST00000490557 MFN1Q8IWA4 741 aa4.43□□□□□ -1.7
HMGB1P38-201ENST00000490557 ZBTB8BQ8NAP8 495 aaPredicted RBP4.43□□□□□ -1.7
HMGB1P38-201ENST00000490557 KBTBD8Q8NFY9 601 aa4.43□□□□□ -1.7
HMGB1P38-201ENST00000490557 SPATA3Q8NHX4 192 aa4.43□□□□□ -1.7
HMGB1P38-201ENST00000490557 DHX58Q96C10 678 aa4.43□□□□□ -1.7
HMGB1P38-201ENST00000490557 GIMAP5Q96F15 307 aa4.43□□□□□ -1.7
HMGB1P38-201ENST00000490557 SERINC2Q96SA4 455 aa4.43□□□□□ -1.7
HMGB1P38-201ENST00000490557 LAT2Q9GZY6 243 aa4.43□□□□□ -1.7
HMGB1P38-201ENST00000490557 ZNF696Q9H7X3 374 aa4.43□□□□□ -1.7
HMGB1P38-201ENST00000490557 FGF21Q9NSA1 209 aa4.43□□□□□ -1.7
HMGB1P38-201ENST00000490557 PRMT7Q9NVM4 692 aaPredicted RBP4.43□□□□□ -1.7
HMGB1P38-201ENST00000490557 MDFICQ9P1T7 246 aa4.43□□□□□ -1.7
HMGB1P38-201ENST00000490557 DAPK2Q9UIK4 370 aa4.43□□□□□ -1.7
HMGB1P38-201ENST00000490557 TMEM221A6NGB7 291 aa4.42□□□□□ -1.7
HMGB1P38-201ENST00000490557 PSMD14O00487 310 aa4.42□□□□□ -1.7
HMGB1P38-201ENST00000490557 PLOD3O60568 738 aa4.42□□□□□ -1.7
HMGB1P38-201ENST00000490557 NGFP01138 241 aa4.42□□□□□ -1.7
HMGB1P38-201ENST00000490557 CD48P09326 243 aa4.42□□□□□ -1.7
HMGB1P38-201ENST00000490557 CFC1BP0CG36 223 aa4.42□□□□□ -1.7
HMGB1P38-201ENST00000490557 CFC1P0CG37 223 aa4.42□□□□□ -1.7
HMGB1P38-201ENST00000490557 SMIM18P0DKX4 95 aa4.42□□□□□ -1.7
HMGB1P38-201ENST00000490557 JAK1P23458 1154 aa4.42□□□□□ -1.7
HMGB1P38-201ENST00000490557 RPL21P46778 160 aaKnown RBP4.42□□□□□ -1.7
HMGB1P38-201ENST00000490557 CRIP2P52943 208 aaPredicted RBP4.42□□□□□ -1.7
HMGB1P38-201ENST00000490557 MAPK12P53778 367 aa4.42□□□□□ -1.7
HMGB1P38-201ENST00000490557 ATP12AP54707 1039 aa4.42□□□□□ -1.7
HMGB1P38-201ENST00000490557 HERV-K104P61576 105 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms