RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 VEPH1Q14D04 833 aa17.53■□□□□ 0.4
VIM-206ENST00000487938 ZXDCQ2QGD7 858 aaPredicted RBP17.53■□□□□ 0.4
VIM-206ENST00000487938 CTU2Q2VPK5 515 aaKnown RBP17.53■□□□□ 0.4
VIM-206ENST00000487938 PGS1Q32NB8 556 aa17.53■□□□□ 0.4
VIM-206ENST00000487938 DGKKQ5KSL6 1271 aa17.53■□□□□ 0.4
VIM-206ENST00000487938 TPGS1Q6ZTW0 290 aa17.53■□□□□ 0.4
VIM-206ENST00000487938 TERB1Q8NA31 727 aa17.53■□□□□ 0.4
VIM-206ENST00000487938 SKA2Q8WVK7 121 aaPredicted RBP17.53■□□□□ 0.4
VIM-206ENST00000487938 USP7Q93009 1102 aa17.53■□□□□ 0.4
VIM-206ENST00000487938 FAM120BQ96EK7 910 aaKnown RBP17.53■□□□□ 0.4
VIM-206ENST00000487938 TSSK3Q96PN8 268 aa17.53■□□□□ 0.4
VIM-206ENST00000487938 HTATIP2Q9BUP3 242 aa17.53■□□□□ 0.4
VIM-206ENST00000487938 C2orf49Q9BVC5 232 aaPredicted RBP17.53■□□□□ 0.4
VIM-206ENST00000487938 DCAF13Q9NV06 445 aaKnown RBP17.53■□□□□ 0.4
VIM-206ENST00000487938 TDRKHQ9Y2W6 561 aaKnown RBP17.53■□□□□ 0.4
VIM-206ENST00000487938 E2F6O75461 281 aa17.52■□□□□ 0.4
VIM-206ENST00000487938 EFEMP2O95967 443 aa17.52■□□□□ 0.4
VIM-206ENST00000487938 INHAP05111 366 aa17.52■□□□□ 0.4
VIM-206ENST00000487938 ANXA5P08758 320 aa17.52■□□□□ 0.4
VIM-206ENST00000487938 PFKLP17858 780 aa17.52■□□□□ 0.4
VIM-206ENST00000487938 CCNA2P20248 432 aa17.52■□□□□ 0.4
VIM-206ENST00000487938 TACR1P25103 407 aa17.52■□□□□ 0.4
VIM-206ENST00000487938 RPS14P62263 151 aaKnown RBP17.52■□□□□ 0.4
VIM-206ENST00000487938 PPP2R2BQ00005 443 aa17.52■□□□□ 0.4
VIM-206ENST00000487938 VAC14Q08AM6 782 aa17.52■□□□□ 0.4
VIM-206ENST00000487938 NFATC3Q12968 1075 aa17.52■□□□□ 0.4
VIM-206ENST00000487938 SPIDRQ14159 915 aa17.52■□□□□ 0.4
VIM-206ENST00000487938 RBM48Q5RL73 367 aaKnown RBP17.52■□□□□ 0.4
VIM-206ENST00000487938 C6orf141Q5SZD1 244 aa17.52■□□□□ 0.4
VIM-206ENST00000487938 DUS1LQ6P1R4 473 aaKnown RBP17.52■□□□□ 0.4
VIM-206ENST00000487938 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.52■□□□□ 0.42e-10■■■■■ 43.7
VIM-206ENST00000487938 RBM23Q86U06 439 aaKnown RBP17.52■□□□□ 0.4
VIM-206ENST00000487938 SPARTQ8N0X7 666 aa17.52■□□□□ 0.4
VIM-206ENST00000487938 CHCHD4Q8N4Q1 142 aa17.52■□□□□ 0.4
VIM-206ENST00000487938 SELENOMQ8WWX9 145 aa17.52■□□□□ 0.4
VIM-206ENST00000487938 AUTS2Q8WXX7 1259 aa17.52■□□□□ 0.4
VIM-206ENST00000487938 ACDQ96AP0 544 aa17.52■□□□□ 0.4
VIM-206ENST00000487938 PYCR2Q96C36 320 aa17.52■□□□□ 0.4
VIM-206ENST00000487938 PARVBQ9HBI1 364 aa17.52■□□□□ 0.4
VIM-206ENST00000487938 IRAK4Q9NWZ3 460 aa17.52■□□□□ 0.4
VIM-206ENST00000487938 MBD1Q9UIS9 605 aaPredicted RBP17.52■□□□□ 0.4
VIM-206ENST00000487938 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP17.52■□□□□ 0.4
VIM-206ENST00000487938 ZNF821O75541 412 aaPredicted RBP17.52■□□□□ 0.4
VIM-206ENST00000487938 SEC14L2O76054 403 aa17.52■□□□□ 0.4
VIM-206ENST00000487938 C1QCP02747 245 aa17.52■□□□□ 0.4
VIM-206ENST00000487938 JUNBP17275 347 aaPredicted RBP17.52■□□□□ 0.4
VIM-206ENST00000487938 CCR7P32248 378 aa17.52■□□□□ 0.4
VIM-206ENST00000487938 CDKN2CP42773 168 aa17.52■□□□□ 0.4
VIM-206ENST00000487938 SMU1Q2TAY7 513 aa17.52■□□□□ 0.4
VIM-206ENST00000487938 LYPLAL1Q5VWZ2 237 aa17.52■□□□□ 0.4
VIM-206ENST00000487938 GRAMD4Q6IC98 578 aa17.52■□□□□ 0.4
VIM-206ENST00000487938 DET1Q7L5Y6 550 aa17.52■□□□□ 0.4
VIM-206ENST00000487938 DEFB128Q7Z7B8 93 aa17.52■□□□□ 0.4
VIM-206ENST00000487938 CHDHQ8NE62 594 aaPredicted RBP17.52■□□□□ 0.4
VIM-206ENST00000487938 UBTD2Q8WUN7 234 aa17.52■□□□□ 0.4
VIM-206ENST00000487938 TRMT2BQ96GJ1 504 aaKnown RBP17.52■□□□□ 0.4
VIM-206ENST00000487938 CSF3RQ99062 836 aa17.52■□□□□ 0.4
VIM-206ENST00000487938 RBM4BQ9BQ04 359 aaKnown RBP17.52■□□□□ 0.4
VIM-206ENST00000487938 RBM4Q9BWF3 364 aaKnown RBP17.52■□□□□ 0.4
VIM-206ENST00000487938 HMX1Q9NP08 348 aaPredicted RBP17.52■□□□□ 0.4
VIM-206ENST00000487938 SERHLQ9NQF3 203 aa17.52■□□□□ 0.4
VIM-206ENST00000487938 PDE10AQ9Y233 779 aa17.52■□□□□ 0.4
VIM-206ENST00000487938 TRBV5-3A0A0A0MS03 114 aa17.51■□□□□ 0.39
VIM-206ENST00000487938 PTGES3LE9PB15 166 aa17.51■□□□□ 0.39
VIM-206ENST00000487938 KRT6AP02538 564 aa17.51■□□□□ 0.39
VIM-206ENST00000487938 KRT6BP04259 564 aa17.51■□□□□ 0.39
VIM-206ENST00000487938 NR4A1P22736 598 aa17.51■□□□□ 0.39
VIM-206ENST00000487938 S100A3P33764 101 aa17.51■□□□□ 0.39
VIM-206ENST00000487938 DCTP40126 519 aa17.51■□□□□ 0.39
VIM-206ENST00000487938 KRT6CP48668 564 aa17.51■□□□□ 0.39
VIM-206ENST00000487938 CD47Q08722 323 aa17.51■□□□□ 0.39
VIM-206ENST00000487938 SPOUT1Q5T280 376 aaKnown RBP17.51■□□□□ 0.39
VIM-206ENST00000487938 CRTC1Q6UUV9 634 aa17.51■□□□□ 0.39
VIM-206ENST00000487938 GPR149Q86SP6 731 aa17.51■□□□□ 0.39
VIM-206ENST00000487938 SVOPLQ8N434 492 aa17.51■□□□□ 0.39
VIM-206ENST00000487938 HDAC2Q92769 488 aaKnown RBP17.51■□□□□ 0.39
VIM-206ENST00000487938 ITCHQ96J02 903 aa17.51■□□□□ 0.39
VIM-206ENST00000487938 EGLN2Q96KS0 407 aa17.51■□□□□ 0.39
VIM-206ENST00000487938 SLC32A1Q9H598 525 aa17.51■□□□□ 0.39
VIM-206ENST00000487938 ATP13A3Q9H7F0 1226 aa17.51■□□□□ 0.39
VIM-206ENST00000487938 RDH14Q9HBH5 336 aa17.51■□□□□ 0.39
VIM-206ENST00000487938 GMEB1Q9Y692 573 aa17.51■□□□□ 0.39
VIM-206ENST00000487938 LOC100130705A0A1B0GUX0 176 aa17.51■□□□□ 0.39
VIM-206ENST00000487938 HTR1AP08908 422 aa17.51■□□□□ 0.39
VIM-206ENST00000487938 CD70P32970 193 aa17.51■□□□□ 0.39
VIM-206ENST00000487938 CTSOP43234 321 aaPredicted RBP17.51■□□□□ 0.39
VIM-206ENST00000487938 STK19P49842 368 aaPredicted RBP17.51■□□□□ 0.39
VIM-206ENST00000487938 GZMMP51124 257 aa17.51■□□□□ 0.39
VIM-206ENST00000487938 HSPA14Q0VDF9 509 aa17.51■□□□□ 0.39
VIM-206ENST00000487938 LMAN2Q12907 356 aa17.51■□□□□ 0.39
VIM-206ENST00000487938 SKIV2LQ15477 1246 aaKnown RBP17.51■□□□□ 0.39
VIM-206ENST00000487938 TTLL9Q3SXZ7 439 aa17.51■□□□□ 0.39
VIM-206ENST00000487938 GPR33Q49SQ1 333 aa17.51■□□□□ 0.39
VIM-206ENST00000487938 ATP13A5Q4VNC0 1218 aa17.51■□□□□ 0.39
VIM-206ENST00000487938 LRRC73Q5JTD7 316 aa17.51■□□□□ 0.39
VIM-206ENST00000487938 ATG9BQ674R7 924 aa17.51■□□□□ 0.39
VIM-206ENST00000487938 CES5AQ6NT32 575 aa17.51■□□□□ 0.39
VIM-206ENST00000487938 UBE2R2Q712K3 238 aaPredicted RBP17.51■□□□□ 0.39
VIM-206ENST00000487938 ADHFE1Q8IWW8 467 aa17.51■□□□□ 0.39
VIM-206ENST00000487938 RNF175Q8N4F7 328 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms