RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 PCTPQ9UKL6 214 aa9.89□□□□□ -0.83
USP39-215ENST00000481409 RAB23Q9ULC3 237 aa9.89□□□□□ -0.83
USP39-215ENST00000481409 RAP2CQ9Y3L5 183 aa9.89□□□□□ -0.83
USP39-215ENST00000481409 TRIOO75962 3097 aa9.89□□□□□ -0.83
USP39-215ENST00000481409 ABCA7Q8IZY2 2146 aa9.89□□□□□ -0.83
USP39-215ENST00000481409 SPAG17Q6Q759 2223 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 LMO7DNF2Z398 122 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 E2F3O00716 465 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 HGSO14964 777 aaPredicted RBP9.88□□□□□ -0.83
USP39-215ENST00000481409 AQP9O43315 295 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 PIAS2O75928 621 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 EPN2O95208 641 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 FKBP9O95302 570 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 HSPA4LO95757 839 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 GUCA1CO95843 209 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 OTCP00480 354 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 EBLN1P0CF75 366 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 TROVE2P10155 538 aaKnown RBP eCLIP9.88□□□□□ -0.83
USP39-215ENST00000481409 EPB42P16452 691 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 RPL10P27635 214 aaKnown RBP9.88□□□□□ -0.83
USP39-215ENST00000481409 EEF1DP29692 281 aaKnown RBP9.88□□□□□ -0.83
USP39-215ENST00000481409 SHMT2P34897 504 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 SLC6A12P48065 614 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 RAB28P51157 221 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 CLCQ05315 142 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 GABPB1Q06547 395 aaPredicted RBP9.88□□□□□ -0.83
USP39-215ENST00000481409 CLCA4Q14CN2 919 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 NAA25Q14CX7 972 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 RPE65Q16518 533 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 CYP2A13Q16696 494 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 ZNF423Q2M1K9 1284 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 UNC50Q53HI1 259 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 PRRT3Q5FWE3 981 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 EEF1AKMT2Q5JPI9 291 aaKnown RBP9.88□□□□□ -0.83
USP39-215ENST00000481409 C10orf62Q5T681 223 aaPredicted RBP9.88□□□□□ -0.83
USP39-215ENST00000481409 CAPN13Q6MZZ7 669 aaPredicted RBP9.88□□□□□ -0.83
USP39-215ENST00000481409 RNF165Q6ZSG1 346 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 CPLX4Q7Z7G2 160 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 SFRP1Q8N474 314 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 CCNYL1Q8N7R7 359 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 CFAP61Q8NHU2 1237 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 PIWIL2Q8TC59 973 aaKnown RBP9.88□□□□□ -0.83
USP39-215ENST00000481409 SMPDL3AQ92484 453 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 EXT2Q93063 718 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 SLC22A18Q96BI1 424 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 CXorf40BQ96DE9 158 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 FERD3LQ96RJ6 166 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 ZNF382Q96SR6 550 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 INSM2Q96T92 566 aaPredicted RBP9.88□□□□□ -0.83
USP39-215ENST00000481409 PKP4Q99569 1192 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 PLCD4Q9BRC7 762 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 HAUS8Q9BT25 410 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 NTMT1Q9BV86 223 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 LRRC61Q9BV99 259 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 DUSP23Q9BVJ7 150 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 LDHAL6BQ9BYZ2 381 aaPredicted RBP9.88□□□□□ -0.83
USP39-215ENST00000481409 KCNH6Q9H252 994 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 GSTO2Q9H4Y5 243 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 UTP6Q9NYH9 597 aaKnown RBP9.88□□□□□ -0.83
USP39-215ENST00000481409 OR6C2Q9NZP2 312 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 STOX2Q9P2F5 926 aaPredicted RBP9.88□□□□□ -0.83
USP39-215ENST00000481409 FAM8A1Q9UBU6 413 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 VTI1BQ9UEU0 232 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 PNMA8BQ9ULN7 279 aaPredicted RBP9.88□□□□□ -0.83
USP39-215ENST00000481409 SLC6A14Q9UN76 642 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 DOLKQ9UPQ8 538 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 WDR37Q9Y2I8 494 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 ANGPTL3Q9Y5C1 460 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 FANCMQ8IYD8 2048 aa9.88□□□□□ -0.83
USP39-215ENST00000481409 A0A1B0GVT2 93 aa9.87□□□□□ -0.83
USP39-215ENST00000481409 NCF1BA6NI72 391 aaPredicted RBP9.87□□□□□ -0.83
USP39-215ENST00000481409 NCF1CA8MVU1 366 aaPredicted RBP9.87□□□□□ -0.83
USP39-215ENST00000481409 TAPBPO15533 448 aa9.87□□□□□ -0.83
USP39-215ENST00000481409 ESRRBO95718 433 aa9.87□□□□□ -0.83
USP39-215ENST00000481409 CER1O95813 267 aa9.87□□□□□ -0.83
USP39-215ENST00000481409 SLC16A8O95907 504 aa9.87□□□□□ -0.83
USP39-215ENST00000481409 ENO1P06733 434 aaKnown RBP9.87□□□□□ -0.83
USP39-215ENST00000481409 ANXA6P08133 673 aa9.87□□□□□ -0.83
USP39-215ENST00000481409 NCF1P14598 390 aaPredicted RBP9.87□□□□□ -0.83
USP39-215ENST00000481409 PCSK2P16519 638 aa9.87□□□□□ -0.83
USP39-215ENST00000481409 HRH2P25021 359 aa9.87□□□□□ -0.83
USP39-215ENST00000481409 AK4P27144 223 aaPredicted RBP9.87□□□□□ -0.83
USP39-215ENST00000481409 IMPA1P29218 277 aa9.87□□□□□ -0.83
USP39-215ENST00000481409 FASLGP48023 281 aa9.87□□□□□ -0.83
USP39-215ENST00000481409 RPL14P50914 215 aaKnown RBP9.87□□□□□ -0.83
USP39-215ENST00000481409 PNLIPRP1P54315 467 aa9.87□□□□□ -0.83
USP39-215ENST00000481409 GTF2H2Q13888 395 aa9.87□□□□□ -0.83
USP39-215ENST00000481409 GGTA1PQ4G0N0 100 aa9.87□□□□□ -0.83
USP39-215ENST00000481409 ARL13AQ5H913 290 aaPredicted RBP9.87□□□□□ -0.83
USP39-215ENST00000481409 GTF2H2CQ6P1K8 395 aa9.87□□□□□ -0.83
USP39-215ENST00000481409 OGFOD3Q6PK18 319 aa9.87□□□□□ -0.83
USP39-215ENST00000481409 SLC30A9Q6PML9 568 aa9.87□□□□□ -0.83
USP39-215ENST00000481409 AGTRAPQ6RW13 159 aa9.87□□□□□ -0.83
USP39-215ENST00000481409 ARMCX6Q7L4S7 300 aa9.87□□□□□ -0.83
USP39-215ENST00000481409 TRIM48Q8IWZ4 208 aa9.87□□□□□ -0.83
USP39-215ENST00000481409 ZNF548Q8NEK5 533 aaPredicted RBP9.87□□□□□ -0.83
USP39-215ENST00000481409 OR6C4Q8NGE1 309 aa9.87□□□□□ -0.83
USP39-215ENST00000481409 OR5AR1Q8NGP9 310 aa9.87□□□□□ -0.83
USP39-215ENST00000481409 OR2L8Q8NGY9 312 aa9.87□□□□□ -0.83
USP39-215ENST00000481409 MAPK15Q8TD08 544 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms