RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 NKG7Q16617 165 aa16.51■□□□□ 0.23
VIM-204ENST00000478746 KRTAP21-3Q3LHN1 58 aa16.51■□□□□ 0.23
VIM-204ENST00000478746 TMEM207Q6UWW9 146 aa16.51■□□□□ 0.23
VIM-204ENST00000478746 GFRALQ6UXV0 394 aa16.51■□□□□ 0.23
VIM-204ENST00000478746 TTLL10Q6ZVT0 673 aa16.51■□□□□ 0.23
VIM-204ENST00000478746 ZNF567Q8N184 647 aa16.51■□□□□ 0.23
VIM-204ENST00000478746 DENND1AQ8TEH3 1009 aa16.51■□□□□ 0.23
VIM-204ENST00000478746 NR4A3Q92570 626 aa16.51■□□□□ 0.23
VIM-204ENST00000478746 CCDC120Q96HB5 630 aa16.51■□□□□ 0.23
VIM-204ENST00000478746 VPS37BQ9H9H4 285 aa16.51■□□□□ 0.23
VIM-204ENST00000478746 MRM3Q9HC36 420 aaKnown RBP16.51■□□□□ 0.23
VIM-204ENST00000478746 SPHK1Q9NYA1 384 aa16.51■□□□□ 0.23
VIM-204ENST00000478746 SERPINC1P01008 464 aa16.5■□□□□ 0.23
VIM-204ENST00000478746 KRT1P04264 644 aa16.5■□□□□ 0.23
VIM-204ENST00000478746 TDGF1P3P51864 188 aa16.5■□□□□ 0.23
VIM-204ENST00000478746 ZBED6P86452 979 aa16.5■□□□□ 0.23
VIM-204ENST00000478746 RBBP7Q16576 425 aa16.5■□□□□ 0.23
VIM-204ENST00000478746 ZNF658BQ4V348 819 aaPredicted RBP16.5■□□□□ 0.23
VIM-204ENST00000478746 MTFR2Q6P444 385 aa16.5■□□□□ 0.23
VIM-204ENST00000478746 OR11G2Q8NGC1 345 aa16.5■□□□□ 0.23
VIM-204ENST00000478746 OR5AR1Q8NGP9 310 aa16.5■□□□□ 0.23
VIM-204ENST00000478746 FLVCR1-AS1Q8TAF5 88 aa16.5■□□□□ 0.23
VIM-204ENST00000478746 GBP4Q96PP9 640 aa16.5■□□□□ 0.23
VIM-204ENST00000478746 VAT1Q99536 393 aa16.5■□□□□ 0.23
VIM-204ENST00000478746 BPIFA3Q9BQP9 254 aa16.5■□□□□ 0.23
VIM-204ENST00000478746 TRIM56Q9BRZ2 755 aaKnown RBP16.5■□□□□ 0.23
VIM-204ENST00000478746 TRIM8Q9BZR9 551 aa16.5■□□□□ 0.23
VIM-204ENST00000478746 EURLQ9NYK6 297 aa16.5■□□□□ 0.23
VIM-204ENST00000478746 MTORP42345 2549 aa16.49■□□□□ 0.23
VIM-204ENST00000478746 A0A1B0GX78 115 aa16.49■□□□□ 0.23
VIM-204ENST00000478746 ISM1B1AKI9 464 aa16.49■□□□□ 0.23
VIM-204ENST00000478746 ONECUT2O95948 504 aa16.49■□□□□ 0.23
VIM-204ENST00000478746 ITGALP20701 1170 aa16.49■□□□□ 0.23
VIM-204ENST00000478746 ITGAXP20702 1163 aa16.49■□□□□ 0.23
VIM-204ENST00000478746 ARG2P78540 354 aa16.49■□□□□ 0.23
VIM-204ENST00000478746 Q0VFX4 171 aa16.49■□□□□ 0.23
VIM-204ENST00000478746 MFSD7Q6UXD7 560 aa16.49■□□□□ 0.23
VIM-204ENST00000478746 RPTNQ6XPR3 784 aa16.49■□□□□ 0.23
VIM-204ENST00000478746 SHISA6Q6ZSJ9 500 aa16.49■□□□□ 0.23
VIM-204ENST00000478746 SNX20Q7Z614 316 aa16.49■□□□□ 0.23
VIM-204ENST00000478746 MCATQ8IVS2 390 aaKnown RBP16.49■□□□□ 0.23
VIM-204ENST00000478746 TAAR6Q96RI8 345 aa16.49■□□□□ 0.23
VIM-204ENST00000478746 PCNX1Q96RV3 2341 aa16.49■□□□□ 0.23
VIM-204ENST00000478746 SPSB2Q99619 263 aa16.49■□□□□ 0.23
VIM-204ENST00000478746 FICDQ9BVA6 458 aa16.49■□□□□ 0.23
VIM-204ENST00000478746 PACSIN1Q9BY11 444 aa16.49■□□□□ 0.23
VIM-204ENST00000478746 SLC26A1Q9H2B4 701 aa16.49■□□□□ 0.23
VIM-204ENST00000478746 SOX17Q9H6I2 414 aaPredicted RBP16.49■□□□□ 0.23
VIM-204ENST00000478746 SEMA3GQ9NS98 782 aa16.49■□□□□ 0.23
VIM-204ENST00000478746 OR6C2Q9NZP2 312 aa16.49■□□□□ 0.23
VIM-204ENST00000478746 POLG2Q9UHN1 485 aa16.49■□□□□ 0.23
VIM-204ENST00000478746 RSPH14Q9UHP6 348 aa16.49■□□□□ 0.23
VIM-204ENST00000478746 NENFQ9UMX5 172 aa16.49■□□□□ 0.23
VIM-204ENST00000478746 ASF1AQ9Y294 204 aa16.49■□□□□ 0.23
VIM-204ENST00000478746 TDRKHQ9Y2W6 561 aaKnown RBP16.49■□□□□ 0.23
VIM-204ENST00000478746 DYTNA2CJ06 578 aa16.48■□□□□ 0.23
VIM-204ENST00000478746 GCGRP47871 477 aa16.48■□□□□ 0.23
VIM-204ENST00000478746 TFDP2Q14188 446 aa16.48■□□□□ 0.23
VIM-204ENST00000478746 LRRC38Q5VT99 294 aa16.48■□□□□ 0.23
VIM-204ENST00000478746 XKRXQ6PP77 449 aa16.48■□□□□ 0.23
VIM-204ENST00000478746 ZNF295-AS1Q8N0V1 137 aa16.48■□□□□ 0.23
VIM-204ENST00000478746 OR13C4Q8NGS5 318 aa16.48■□□□□ 0.23
VIM-204ENST00000478746 ZDHHC19Q8WVZ1 309 aaPredicted RBP16.48■□□□□ 0.23
VIM-204ENST00000478746 DDX56Q9NY93 547 aaKnown RBP16.48■□□□□ 0.23
VIM-204ENST00000478746 ZDHHC3Q9NYG2 299 aa16.48■□□□□ 0.23
VIM-204ENST00000478746 NXT1Q9UKK6 140 aaKnown RBP16.48■□□□□ 0.23
VIM-204ENST00000478746 TRHDEQ9UKU6 1024 aa16.48■□□□□ 0.23
VIM-204ENST00000478746 CAPN11Q9UMQ6 739 aa16.48■□□□□ 0.23
VIM-204ENST00000478746 TRAV17A0A0B4J275 112 aa16.47■□□□□ 0.23
VIM-204ENST00000478746 DSCR3O14972 297 aa16.47■□□□□ 0.23
VIM-204ENST00000478746 CST8O60676 142 aa16.47■□□□□ 0.23
VIM-204ENST00000478746 SNRNP200O75643 2136 aaKnown RBP16.47■□□□□ 0.23
VIM-204ENST00000478746 UNC5CO95185 931 aa16.47■□□□□ 0.23
VIM-204ENST00000478746 CRTAMO95727 393 aa16.47■□□□□ 0.23
VIM-204ENST00000478746 GSTM1P09488 218 aa16.47■□□□□ 0.23
VIM-204ENST00000478746 TNNT1P13805 278 aa16.47■□□□□ 0.23
VIM-204ENST00000478746 PECAM1P16284 738 aaPredicted RBP16.47■□□□□ 0.23
VIM-204ENST00000478746 SSTR2P30874 369 aa16.47■□□□□ 0.23
VIM-204ENST00000478746 ARHGAP25P42331 645 aa16.47■□□□□ 0.23
VIM-204ENST00000478746 GEMP55040 296 aa16.47■□□□□ 0.23
VIM-204ENST00000478746 GSTM4Q03013 218 aa16.47■□□□□ 0.23
VIM-204ENST00000478746 TESK1Q15569 626 aa16.47■□□□□ 0.23
VIM-204ENST00000478746 INAQ16352 499 aa16.47■□□□□ 0.23
VIM-204ENST00000478746 ZNF800Q2TB10 664 aaPredicted RBP eCLIP16.47■□□□□ 0.23
VIM-204ENST00000478746 GPR33Q49SQ1 333 aa16.47■□□□□ 0.23
VIM-204ENST00000478746 RANBP10Q6VN20 620 aa16.47■□□□□ 0.23
VIM-204ENST00000478746 COX15Q7KZN9 410 aa16.47■□□□□ 0.23
VIM-204ENST00000478746 TBC1D21Q8IYX1 336 aa16.47■□□□□ 0.23
VIM-204ENST00000478746 SLC35G2Q8TBE7 412 aa16.47■□□□□ 0.23
VIM-204ENST00000478746 P3H4Q92791 437 aa16.47■□□□□ 0.23
VIM-204ENST00000478746 PLA2G3Q9NZ20 509 aa16.47■□□□□ 0.23
VIM-204ENST00000478746 LUC7L2Q9Y383 392 aaKnown RBP16.47■□□□□ 0.23
VIM-204ENST00000478746 IGLV3-16A0A075B6K0 115 aa16.46■□□□□ 0.23
VIM-204ENST00000478746 GOLGA6L22H0YM25 854 aa16.46■□□□□ 0.23
VIM-204ENST00000478746 ANXA9O76027 345 aa16.46■□□□□ 0.23
VIM-204ENST00000478746 HPP00738 406 aa16.46■□□□□ 0.23
VIM-204ENST00000478746 TPBGLP0DKB5 382 aa16.46■□□□□ 0.23
VIM-204ENST00000478746 CAPN3P20807 821 aa16.46■□□□□ 0.23
VIM-204ENST00000478746 CA7P43166 264 aa16.46■□□□□ 0.23
VIM-204ENST00000478746 CDKN1CP49918 316 aaPredicted RBP16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms