RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 TAGLNQ01995 201 aaKnown RBP6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 LAPTM5Q13571 262 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 DCAF12Q5T6F0 453 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 GPRC6AQ5T6X5 926 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 MEI1Q5TIA1 1274 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 AGAP9Q5VTM2 703 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 AADACL2Q6P093 401 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 RANBP10Q6VN20 620 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 RPTNQ6XPR3 784 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 TMEM26Q6ZUK4 368 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 ARHGAP22Q7Z5H3 698 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 C11orf96Q7Z7L8 435 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 AMZ2Q86W34 360 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 ZFAND4Q86XD8 727 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 RBM12BQ8IXT5 1001 aaKnown RBP6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 RASGEF1AQ8N9B8 481 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 SPC24Q8NBT2 197 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 CCDC110Q8TBZ0 833 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 CXorf40BQ96DE9 158 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 SGF29Q96ES7 293 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 ZNF514Q96K75 400 aaPredicted RBP6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 TEFMQ96QE5 360 aaKnown RBP6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 FAM118BQ9BPY3 351 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 C19orf43Q9BQ61 176 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 TBL1YQ9BQ87 522 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 APOL2Q9BQE5 337 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 ZPBPQ9BS86 351 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 TBC1D10AQ9BXI6 508 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 ASPSCR1Q9BZE9 553 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 TSGA10Q9BZW7 698 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 UGT1A7Q9HAW7 530 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 UGT1A10Q9HAW8 530 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 UGT1A8Q9HAW9 530 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 OCIAD1Q9NX40 245 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 ZNF624Q9P2J8 865 aaPredicted RBP6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 TRIM10Q9UDY6 481 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 FEZ2Q9UHY8 353 aaPredicted RBP6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 TMPRSS11EQ9UL52 423 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 PACSIN2Q9UNF0 486 aaPredicted RBP6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 GPR55Q9Y2T6 319 aaPredicted RBP6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 B3GALT1Q9Y5Z6 326 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 ARL5AQ9Y689 179 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 MN1Q10571 1320 aaPredicted RBP6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 KALRNO60229 2985 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 FASNP49327 2511 aaKnown RBP6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 SMG1Q96Q15 3661 aaKnown RBP6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 A0A1B0GTL3 188 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 KLHL33A6NCF5 533 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 OR2AG2A6NM03 316 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 OR52A4PA6NMU1 304 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 NUDT19A8MXV4 375 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 TOX3O15405 576 aaPredicted RBP6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 GPR39O43194 453 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 POP7O75817 140 aaKnown RBP6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 SRP72O76094 671 aaKnown RBP6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 UBXN7O94888 489 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 HTR3BO95264 441 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 FTCDO95954 541 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 C9P02748 559 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 PLA2G1BP04054 148 aaKnown RBP6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 ANKRD34CP0C6C1 535 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 BRAFP15056 766 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 TYRP1P17643 537 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 HADHAP40939 763 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 DRG2P55039 364 aaKnown RBP6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 MC2RQ01718 297 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 DMPKQ09013 629 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 SRSF6Q13247 344 aaKnown RBP6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 GPR18Q14330 331 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 PTPRCAPQ14761 206 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 LONRF2Q1L5Z9 754 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 PARP6Q2NL67 630 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 P3H1Q32P28 736 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 KIAA1614Q5VZ46 1190 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 ANKS6Q68DC2 871 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 TMEM220Q6QAJ8 160 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 PCSK4Q6UW60 755 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 CEACAM20Q6UY09 585 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 ARHGEF18Q6ZSZ5 1173 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 VASH2Q86V25 355 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 RNF10Q8N5U6 811 aaKnown RBP6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 BMPERQ8N8U9 685 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 FAM71DQ8N9W8 422 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 OR4K2Q8NGD2 314 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 ZNF398Q8TD17 642 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 ULK4Q96C45 1275 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 DCUN1D1Q96GG9 259 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 HES6Q96HZ4 224 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 C9orf72Q96LT7 481 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 TGM7Q96PF1 710 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 DESI2Q9BSY9 194 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 ARNT2Q9HBZ2 717 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 SLC40A1Q9NP59 571 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 FBXO8Q9NRD0 319 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 OGFRQ9NZT2 677 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 KLHL3Q9UH77 587 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 CRLS1Q9UJA2 301 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 WDR37Q9Y2I8 494 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 BAHCC1Q9P281 2608 aa6.65□□□□□ -1.34
CCDC88A-213ENST00000476903 A0A0U1RQJ8 604 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms