RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 CDKL1Q00532 357 aa10.37□□□□□ -0.75
UBR4-208ENST00000459947 C3orf38Q5JPI3 329 aa10.37□□□□□ -0.75
UBR4-208ENST00000459947 HP1BP3Q5SSJ5 553 aaPredicted RBP10.37□□□□□ -0.75
UBR4-208ENST00000459947 DUS1LQ6P1R4 473 aaKnown RBP10.37□□□□□ -0.75
UBR4-208ENST00000459947 RASGRP3Q8IV61 690 aa10.37□□□□□ -0.75
UBR4-208ENST00000459947 LILRA3Q8N6C8 439 aaPredicted RBP10.37□□□□□ -0.75
UBR4-208ENST00000459947 PPM1NQ8N819 430 aa10.37□□□□□ -0.75
UBR4-208ENST00000459947 OR4E2Q8NGC2 313 aa10.37□□□□□ -0.75
UBR4-208ENST00000459947 CFAP61Q8NHU2 1237 aa10.37□□□□□ -0.75
UBR4-208ENST00000459947 ZCCHC14Q8WYQ9 949 aaKnown RBP10.37□□□□□ -0.75
UBR4-208ENST00000459947 RSC1A1Q92681 617 aa10.37□□□□□ -0.75
UBR4-208ENST00000459947 TRIM56Q9BRZ2 755 aaKnown RBP10.37□□□□□ -0.75
UBR4-208ENST00000459947 SLC12A9Q9BXP2 914 aa10.37□□□□□ -0.75
UBR4-208ENST00000459947 SEMA6CQ9H3T2 930 aa10.37□□□□□ -0.75
UBR4-208ENST00000459947 CAAP1Q9H8G2 361 aa10.37□□□□□ -0.75
UBR4-208ENST00000459947 COL27A1Q8IZC6 1860 aaPredicted RBP10.37□□□□□ -0.75
UBR4-208ENST00000459947 A0A087X1B8 175 aa10.37□□□□□ -0.75
UBR4-208ENST00000459947 IQCF5A8MTL0 148 aa10.37□□□□□ -0.75
UBR4-208ENST00000459947 GFYI3L273 518 aa10.37□□□□□ -0.75
UBR4-208ENST00000459947 NELFEP18615 380 aaKnown RBP10.37□□□□□ -0.75
UBR4-208ENST00000459947 CMPK1P30085 196 aa10.37□□□□□ -0.75
UBR4-208ENST00000459947 PDX1P52945 283 aa10.37□□□□□ -0.75
UBR4-208ENST00000459947 YOD1Q5VVQ6 348 aaPredicted RBP10.37□□□□□ -0.75
UBR4-208ENST00000459947 BROXQ5VW32 411 aa10.37□□□□□ -0.75
UBR4-208ENST00000459947 SPESP1Q6UW49 350 aa10.37□□□□□ -0.75
UBR4-208ENST00000459947 UBE2R2Q712K3 238 aaPredicted RBP10.37□□□□□ -0.75
UBR4-208ENST00000459947 SFTPA2Q8IWL1 248 aa10.37□□□□□ -0.75
UBR4-208ENST00000459947 SPDYE1Q8NFV5 336 aaPredicted RBP10.37□□□□□ -0.75
UBR4-208ENST00000459947 ASB11Q8WXH4 323 aa10.37□□□□□ -0.75
UBR4-208ENST00000459947 FGF11Q92914 225 aa10.37□□□□□ -0.75
UBR4-208ENST00000459947 TSNARE1Q96NA8 513 aa10.37□□□□□ -0.75
UBR4-208ENST00000459947 PITPNM3Q9BZ71 974 aa10.37□□□□□ -0.75
UBR4-208ENST00000459947 DPH1Q9BZG8 443 aa10.37□□□□□ -0.75
UBR4-208ENST00000459947 CDC42EP4Q9H3Q1 356 aaKnown RBP10.37□□□□□ -0.75
UBR4-208ENST00000459947 PARVBQ9HBI1 364 aa10.37□□□□□ -0.75
UBR4-208ENST00000459947 PLAC1Q9HBJ0 212 aa10.37□□□□□ -0.75
UBR4-208ENST00000459947 SLC39A1Q9NY26 324 aa10.37□□□□□ -0.75
UBR4-208ENST00000459947 SATB2Q9UPW6 733 aa10.37□□□□□ -0.75
UBR4-208ENST00000459947 CFAP20Q9Y6A4 193 aaKnown RBP10.37□□□□□ -0.75
UBR4-208ENST00000459947 VCANP13611 3396 aa10.37□□□□□ -0.75
UBR4-208ENST00000459947 RHOXF2BP0C7M4 288 aa10.37□□□□□ -0.75
UBR4-208ENST00000459947 ERGP11308 486 aa10.37□□□□□ -0.75
UBR4-208ENST00000459947 GPX6P59796 221 aa10.37□□□□□ -0.75
UBR4-208ENST00000459947 USP10Q14694 798 aaKnown RBP10.37□□□□□ -0.75
UBR4-208ENST00000459947 LARP7Q4G0J3 582 aaKnown RBP eCLIP10.37□□□□□ -0.75
UBR4-208ENST00000459947 ZC3H12BQ5HYM0 836 aaKnown RBP10.37□□□□□ -0.75
UBR4-208ENST00000459947 NKAIN2Q5VXU1 208 aa10.37□□□□□ -0.75
UBR4-208ENST00000459947 LCA5Q86VQ0 697 aa10.37□□□□□ -0.75
UBR4-208ENST00000459947 ZNF761Q86XN6 746 aaPredicted RBP10.37□□□□□ -0.75
UBR4-208ENST00000459947 TBC1D19Q8N5T2 526 aa10.37□□□□□ -0.75
UBR4-208ENST00000459947 ZNF248Q8NDW4 579 aa10.37□□□□□ -0.75
UBR4-208ENST00000459947 MTBPQ96DY7 904 aa10.37□□□□□ -0.75
UBR4-208ENST00000459947 LINGO1Q96FE5 620 aa10.37□□□□□ -0.75
UBR4-208ENST00000459947 TCTN2Q96GX1 697 aa10.37□□□□□ -0.75
UBR4-208ENST00000459947 RHOXF2Q9BQY4 288 aa10.37□□□□□ -0.75
UBR4-208ENST00000459947 RARRES3Q9UL19 164 aa10.37□□□□□ -0.75
UBR4-208ENST00000459947 EFCAB7A8K855 629 aa10.36□□□□□ -0.75
UBR4-208ENST00000459947 IQCJ-SCHIP1C9J366 451 aaPredicted RBP10.36□□□□□ -0.75
UBR4-208ENST00000459947 SERPINB8P50452 374 aa10.36□□□□□ -0.75
UBR4-208ENST00000459947 ZNF789Q5FWF6 425 aa10.36□□□□□ -0.75
UBR4-208ENST00000459947 CPNE9Q8IYJ1 553 aa10.36□□□□□ -0.75
UBR4-208ENST00000459947 D2HGDHQ8N465 521 aa10.36□□□□□ -0.75
UBR4-208ENST00000459947 DERL2Q9GZP9 239 aa10.36□□□□□ -0.75
UBR4-208ENST00000459947 PISDQ9UG56 409 aa10.36□□□□□ -0.75
UBR4-208ENST00000459947 GOLGA4Q13439 2230 aaKnown RBP10.36□□□□□ -0.75
UBR4-208ENST00000459947 TARM1B6A8C7 271 aa10.36□□□□□ -0.75
UBR4-208ENST00000459947 TNFSF15O95150 251 aa10.36□□□□□ -0.75
UBR4-208ENST00000459947 S100BP04271 92 aaPredicted RBP10.36□□□□□ -0.75
UBR4-208ENST00000459947 POLR2CP19387 275 aaPredicted RBP10.36□□□□□ -0.75
UBR4-208ENST00000459947 RPA3P35244 121 aaPredicted RBP10.36□□□□□ -0.75
UBR4-208ENST00000459947 MSH2P43246 934 aa10.36□□□□□ -0.75
UBR4-208ENST00000459947 PMS2P54278 862 aa10.36□□□□□ -0.75
UBR4-208ENST00000459947 RELAQ04206 551 aa10.36□□□□□ -0.75
UBR4-208ENST00000459947 C16orf72Q14CZ0 275 aa10.36□□□□□ -0.75
UBR4-208ENST00000459947 ADGRF3Q8IZF5 1079 aa10.36□□□□□ -0.75
UBR4-208ENST00000459947 UNC5BQ8IZJ1 945 aa10.36□□□□□ -0.75
UBR4-208ENST00000459947 ZUFSPQ96AP4 578 aa10.36□□□□□ -0.75
UBR4-208ENST00000459947 SLC46A1Q96NT5 459 aa10.36□□□□□ -0.75
UBR4-208ENST00000459947 RDH14Q9HBH5 336 aa10.36□□□□□ -0.75
UBR4-208ENST00000459947 IL1RAPL1Q9NZN1 696 aa10.36□□□□□ -0.75
UBR4-208ENST00000459947 CAMSAP3Q9P1Y5 1249 aaPredicted RBP10.36□□□□□ -0.75
UBR4-208ENST00000459947 NFU1Q9UMS0 254 aa10.36□□□□□ -0.75
UBR4-208ENST00000459947 KLK4Q9Y5K2 254 aa10.36□□□□□ -0.75
UBR4-208ENST00000459947 CDRT15L2A8MXV6 281 aa10.36□□□□□ -0.75
UBR4-208ENST00000459947 ISM1B1AKI9 464 aa10.36□□□□□ -0.75
UBR4-208ENST00000459947 BTN3A1O00481 513 aa10.36□□□□□ -0.75
UBR4-208ENST00000459947 KRT37O76014 449 aa10.36□□□□□ -0.75
UBR4-208ENST00000459947 IPO13O94829 963 aaKnown RBP10.36□□□□□ -0.75
UBR4-208ENST00000459947 GABRB3P28472 473 aa10.36□□□□□ -0.75
UBR4-208ENST00000459947 RAB10P61026 200 aa10.36□□□□□ -0.75
UBR4-208ENST00000459947 KBTBD12Q3ZCT8 623 aa10.36□□□□□ -0.75
UBR4-208ENST00000459947 ZNF574Q6ZN55 896 aaPredicted RBP10.36□□□□□ -0.75
UBR4-208ENST00000459947 VRK3Q8IV63 474 aa10.36□□□□□ -0.75
UBR4-208ENST00000459947 NMRAL1Q9HBL8 299 aa10.36□□□□□ -0.75
UBR4-208ENST00000459947 GPAMQ9HCL2 828 aa10.36□□□□□ -0.75
UBR4-208ENST00000459947 SOHLH2Q9NX45 425 aa10.36□□□□□ -0.75
UBR4-208ENST00000459947 CTNNAL1Q9UBT7 734 aa10.36□□□□□ -0.75
UBR4-208ENST00000459947 TLK1Q9UKI8 766 aa10.36□□□□□ -0.75
UBR4-208ENST00000459947 FAM149AA5PLN7 773 aa10.35□□□□□ -0.75
UBR4-208ENST00000459947 CD63P08962 238 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms