RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 MYO9AB2RTY4 2548 aa7.8□□□□□ -1.16
VIM-202ENST00000421459 FBN2P35556 2912 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 SLC5A10A0PJK1 596 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 KLHL33A6NCF5 533 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 KRT87PA6NCN2 255 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 ENO4A6NNW6 628 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 IQCF5A8MTL0 148 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 AGPSO00116 658 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 E2F3O00716 465 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 SOCS6O14544 535 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 NRP2O60462 931 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 ZG16O60844 167 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 MED26O95402 600 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 HBQ1P09105 142 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 POU3F2P20265 443 aaPredicted RBP7.79□□□□□ -1.16
VIM-202ENST00000421459 MAGP20916 626 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 TNFRSF8P28908 595 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 OR1D4P47884 311 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 Q0VFX4 171 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 RPA4Q13156 261 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 TRIM14Q14142 442 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 ELOAQ14241 798 aaKnown RBP7.79□□□□□ -1.16
VIM-202ENST00000421459 GPR33Q49SQ1 333 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 VRK3Q8IV63 474 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 MCATQ8IVS2 390 aaKnown RBP7.79□□□□□ -1.16
VIM-202ENST00000421459 LINC01555Q8NAE3 123 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 TTC13Q8NBP0 860 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 RNF214Q8ND24 703 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 DNAJB14Q8TBM8 379 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 GRHL3Q8TE85 626 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 UBE2Q2Q8WVN8 375 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 CNDP1Q96KN2 507 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 SPATA13Q96N96 652 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 AP1M1Q9BXS5 423 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 ARNT2Q9HBZ2 717 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 ATP13A2Q9NQ11 1180 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 TXLNGQ9NUQ3 528 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 NLE1Q9NVX2 485 aaPredicted RBP7.79□□□□□ -1.16
VIM-202ENST00000421459 EURLQ9NYK6 297 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 CTSFQ9UBX1 484 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 SLC2A6Q9UGQ3 507 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 CDC23Q9UJX2 597 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 INTUQ9ULD6 942 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 NOVA2Q9UNW9 492 aaKnown RBP7.79□□□□□ -1.16
VIM-202ENST00000421459 PLCL2Q9UPR0 1127 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 PCDHA13Q9Y5I0 950 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 AP1M2Q9Y6Q5 423 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 MAU2Q9Y6X3 613 aa7.79□□□□□ -1.16
VIM-202ENST00000421459 CCDC162PA2VCL2 907 aa7.78□□□□□ -1.16
VIM-202ENST00000421459 AKR1B15C9JRZ8 316 aaPredicted RBP7.78□□□□□ -1.16
VIM-202ENST00000421459 PJA2O43164 708 aa7.78□□□□□ -1.16
VIM-202ENST00000421459 CBFA2T2O43439 604 aa7.78□□□□□ -1.16
VIM-202ENST00000421459 WISP2O76076 250 aa7.78□□□□□ -1.16
VIM-202ENST00000421459 KLHL18O94889 574 aa7.78□□□□□ -1.16
VIM-202ENST00000421459 ALPPP05187 535 aa7.78□□□□□ -1.16
VIM-202ENST00000421459 TPM3P06753 285 aa7.78□□□□□ -1.16
VIM-202ENST00000421459 MSNP26038 577 aaKnown RBP7.78□□□□□ -1.16
VIM-202ENST00000421459 CTNNA2P26232 953 aa7.78□□□□□ -1.16
VIM-202ENST00000421459 VARSP26640 1264 aaKnown RBP7.78□□□□□ -1.16
VIM-202ENST00000421459 SHMT2P34897 504 aa7.78□□□□□ -1.16
VIM-202ENST00000421459 GCGRP47871 477 aa7.78□□□□□ -1.16
VIM-202ENST00000421459 HADHBP55084 474 aaKnown RBP7.78□□□□□ -1.16
VIM-202ENST00000421459 GDF10P55107 478 aa7.78□□□□□ -1.16
VIM-202ENST00000421459 SOX8P57073 446 aa7.78□□□□□ -1.16
VIM-202ENST00000421459 CACNG1Q06432 222 aa7.78□□□□□ -1.16
VIM-202ENST00000421459 TBX2Q13207 712 aaPredicted RBP7.78□□□□□ -1.16
VIM-202ENST00000421459 GRB7Q14451 532 aa7.78□□□□□ -1.16
VIM-202ENST00000421459 NKG7Q16617 165 aa7.78□□□□□ -1.16
VIM-202ENST00000421459 PRAMEF13Q5VWM6 474 aa7.78□□□□□ -1.16
VIM-202ENST00000421459 KCTD11Q693B1 232 aa7.78□□□□□ -1.16
VIM-202ENST00000421459 SP5Q6BEB4 398 aaPredicted RBP7.78□□□□□ -1.16
VIM-202ENST00000421459 FCRL6Q6DN72 434 aa7.78□□□□□ -1.16
VIM-202ENST00000421459 ZNF449Q6P9G9 518 aa7.78□□□□□ -1.16
VIM-202ENST00000421459 KIRREL2Q6UWL6 708 aa7.78□□□□□ -1.16
VIM-202ENST00000421459 LINC00696Q6ZRV3 163 aa7.78□□□□□ -1.16
VIM-202ENST00000421459 OVCH1Q7RTY7 1134 aa7.78□□□□□ -1.16
VIM-202ENST00000421459 TICAM1Q8IUC6 712 aa7.78□□□□□ -1.16
VIM-202ENST00000421459 CDKL3Q8IVW4 592 aaPredicted RBP7.78□□□□□ -1.16
VIM-202ENST00000421459 PRSS58Q8IYP2 241 aa7.78□□□□□ -1.16
VIM-202ENST00000421459 TBC1D21Q8IYX1 336 aa7.78□□□□□ -1.16
VIM-202ENST00000421459 FAM71DQ8N9W8 422 aa7.78□□□□□ -1.16
VIM-202ENST00000421459 ST6GALNAC3Q8NDV1 305 aa7.78□□□□□ -1.16
VIM-202ENST00000421459 CFAP61Q8NHU2 1237 aa7.78□□□□□ -1.16
VIM-202ENST00000421459 PROKR1Q8TCW9 393 aa7.78□□□□□ -1.16
VIM-202ENST00000421459 LKAAEAR1Q8TD35 194 aa7.78□□□□□ -1.16
VIM-202ENST00000421459 HEXDCQ8WVB3 486 aa7.78□□□□□ -1.16
VIM-202ENST00000421459 ALG3Q92685 438 aa7.78□□□□□ -1.16
VIM-202ENST00000421459 TBRG4Q969Z0 631 aaKnown RBP eCLIP7.78□□□□□ -1.16
VIM-202ENST00000421459 IP6K3Q96PC2 410 aa7.78□□□□□ -1.16
VIM-202ENST00000421459 SPSB2Q99619 263 aa7.78□□□□□ -1.16
VIM-202ENST00000421459 WDR77Q9BQA1 342 aaPredicted RBP7.78□□□□□ -1.16
VIM-202ENST00000421459 NDC1Q9BTX1 674 aa7.78□□□□□ -1.16
VIM-202ENST00000421459 MENTQ9BUN1 341 aa7.78□□□□□ -1.16
VIM-202ENST00000421459 OSBPL8Q9BZF1 889 aa7.78□□□□□ -1.16
VIM-202ENST00000421459 UNKQ9C0B0 810 aaKnown RBP7.78□□□□□ -1.16
VIM-202ENST00000421459 PLA2G3Q9NZ20 509 aa7.78□□□□□ -1.16
VIM-202ENST00000421459 R3HDM2Q9Y2K5 976 aaKnown RBP7.78□□□□□ -1.16
VIM-202ENST00000421459 PCDHA3Q9Y5H8 950 aa7.78□□□□□ -1.16
VIM-202ENST00000421459 HS3ST3B1Q9Y662 390 aa7.78□□□□□ -1.16
VIM-202ENST00000421459 OTOGQ6ZRI0 2925 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms