RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 COQ8AQ8NI60 647 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 KCNQ5Q9NR82 932 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 TTC34A8MYJ7 566 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 USP41Q3LFD5 358 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 NOXA1Q86UR1 476 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 ZBTB46Q86UZ6 589 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 MALSU1Q96EH3 234 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 CDC6Q99741 560 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 ZBTB26Q9HCK0 441 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 ST14Q9Y5Y6 855 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 FPR1P21462 350 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 PON2Q15165 354 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 C11orf91Q3C1V1 193 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 GALNTL5Q7Z4T8 443 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 REPS2Q8NFH8 660 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 TMEM45AQ9NWC5 275 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 SPIN1Q9Y657 262 aaPredicted RBP12.67□□□□□ -0.38
COL6A3-206ENST00000409809 MBL2P11226 248 aaPredicted RBP12.67□□□□□ -0.38
COL6A3-206ENST00000409809 SLC2A5P22732 501 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 CLCN4P51793 760 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 HERVK_113P63132 956 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 ACTC1P68032 377 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 ACTA1P68133 377 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 PRKCDQ05655 676 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 GK2Q14410 553 aaPredicted RBP12.67□□□□□ -0.38
COL6A3-206ENST00000409809 INTS6LQ5JSJ4 861 aaKnown RBP12.67□□□□□ -0.38
COL6A3-206ENST00000409809 DNM1P34Q6PK57 102 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 CCBE1Q6UXH8 406 aaPredicted RBP12.67□□□□□ -0.38
COL6A3-206ENST00000409809 ZNF641Q96N77 438 aaPredicted RBP12.67□□□□□ -0.38
COL6A3-206ENST00000409809 ERVK-6Q9BXR3 956 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 CPVLQ9H3G5 476 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 UFSP2Q9NUQ7 469 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 NKRFO15226 690 aaKnown RBP eCLIP12.67□□□□□ -0.38
COL6A3-206ENST00000409809 OR10H2O60403 315 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 PEX14O75381 377 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 SBK2P0C263 348 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 SLC1A5Q15758 541 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 CAPN13Q6MZZ7 669 aaPredicted RBP12.67□□□□□ -0.38
COL6A3-206ENST00000409809 SLC30A10Q6XR72 485 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 FAM46DQ8NEK8 389 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 TNFRSF10DQ9UBN6 386 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 DEPDC5O75140 1603 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 TOR1BO14657 336 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 AP2A1O95782 977 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 ATP6AP1Q15904 470 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 RFWD3Q6PCD5 774 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 SLC41A3Q96GZ6 507 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 SPAG17Q6Q759 2223 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 GTPBP1O00178 669 aaKnown RBP12.66□□□□□ -0.38
COL6A3-206ENST00000409809 ITGB1P05556 798 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 GALEQ14376 348 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 RAB39AQ14964 217 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 OR2L8Q8NGY9 312 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 RAD51AP1Q96B01 352 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 LIN37Q96GY3 246 aaPredicted RBP12.66□□□□□ -0.38
COL6A3-206ENST00000409809 NT5DC2Q9H857 520 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 TMX2Q9Y320 296 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 NUP214P35658 2090 aaPredicted RBP12.66□□□□□ -0.38
COL6A3-206ENST00000409809 MXD1Q05195 221 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 GNASQ5JWF2 1037 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 ZNF781Q8N8C0 355 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 MARCH10Q8NA82 808 aaPredicted RBP12.66□□□□□ -0.38
COL6A3-206ENST00000409809 DBNDD1Q9H9R9 158 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 PPP4R1LQ9P1A2 415 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 PPIEQ9UNP9 301 aaKnown RBP12.66□□□□□ -0.38
COL6A3-206ENST00000409809 DAGLAQ9Y4D2 1042 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 C2P06681 752 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 RELAQ04206 551 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 STRADAQ7RTN6 431 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 FAM84BQ96KN1 310 aaPredicted RBP12.66□□□□□ -0.38
COL6A3-206ENST00000409809 RAD9AQ99638 391 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 SULT4A1Q9BR01 284 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 ACTR10Q9NZ32 417 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 IKZF2Q9UKS7 526 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 HK1P19367 917 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 UBA1P22314 1058 aaKnown RBP12.66□□□□□ -0.38
COL6A3-206ENST00000409809 ALDH7A1P49419 539 aaKnown RBP12.66□□□□□ -0.38
COL6A3-206ENST00000409809 C6orf89Q6UWU4 347 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 LRRC57Q8N9N7 239 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 PIGKQ92643 395 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 FAM136AQ96C01 138 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 LRRC58Q96CX6 371 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 GBA3Q9H227 469 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 TMEM134Q9H6X4 195 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 ARPC2O15144 300 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 ATP6AP2O75787 350 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 GADD45GO95257 159 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 CHRNA1P02708 482 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 EFEMP1Q12805 493 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 DEDD2Q8WXF8 326 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 ZBED6CLQ96FA7 236 aaPredicted RBP12.66□□□□□ -0.38
COL6A3-206ENST00000409809 LINGO1Q96FE5 620 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 ZNF490Q9ULM2 529 aaPredicted RBP12.66□□□□□ -0.38
COL6A3-206ENST00000409809 RFPL3O75679 317 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 MT-ND5P03915 603 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 S100A8P05109 93 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 CERCAMQ5T4B2 595 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 FAM35AQ86V20 835 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 ZC3HC1Q86WB0 502 aaKnown RBP12.66□□□□□ -0.38
COL6A3-206ENST00000409809 TICAM1Q8IUC6 712 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms