RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 GPR18Q14330 331 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 CCDC153Q494R4 210 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 C10orf62Q5T681 223 aaPredicted RBP6.8□□□□□ -1.32
LIMA1-202ENST00000394943 TAF8Q7Z7C8 310 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 PIM3Q86V86 326 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 LRRC34Q8IZ02 419 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 OR52E1Q8NGJ3 308 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 IFI44Q8TCB0 444 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 RAD51AP1Q96B01 352 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 PKP4Q99569 1192 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 MRPL57Q9BQC6 102 aaKnown RBP6.8□□□□□ -1.32
LIMA1-202ENST00000394943 ABCG4Q9H172 646 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 ZNF446Q9NWS9 450 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 KCNK6Q9Y257 313 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 NEUROG3Q9Y4Z2 214 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 ZNF292O60281 2723 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 OR2A25A4D2G3 310 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 G3V2L1 256 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 SH3BP5O60239 455 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 ACSL3O95573 720 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 HHEXQ03014 270 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 EIF3IQ13347 325 aaKnown RBP6.8□□□□□ -1.32
LIMA1-202ENST00000394943 PUM1Q14671 1186 aaKnown RBP eCLIP6.8□□□□□ -1.32
LIMA1-202ENST00000394943 OR4D1Q15615 310 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 SULT1C3Q6IMI6 304 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 CRTC3Q6UUV7 619 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 OTOAQ7RTW8 1153 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 LRRC70Q7Z2Q7 622 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 SLCO6A1Q86UG4 719 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 DNAJC22Q8N4W6 341 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 PPM1NQ8N819 430 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 ATL1Q8WXF7 558 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 CCDC74AQ96AQ1 378 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 MAGEB10Q96LZ2 347 aaPredicted RBP6.8□□□□□ -1.32
LIMA1-202ENST00000394943 NDNQ99608 321 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 SLC32A1Q9H598 525 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 STOX2Q9P2F5 926 aaPredicted RBP6.8□□□□□ -1.32
LIMA1-202ENST00000394943 RAPGEFL1Q9UHV5 662 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 PLAAQ9Y263 795 aa6.8□□□□□ -1.32
LIMA1-202ENST00000394943 TTC28Q96AY4 2481 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 D6RAR5 112 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 RBP1P09455 135 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 CASP8Q14790 479 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 MANEAQ5SRI9 462 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 YOD1Q5VVQ6 348 aaPredicted RBP6.79□□□□□ -1.32
LIMA1-202ENST00000394943 GUSBP11Q6P575 273 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 ZNF517Q6ZMY9 492 aaPredicted RBP6.79□□□□□ -1.32
LIMA1-202ENST00000394943 FAM129CQ86XR2 697 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 CPNE9Q8IYJ1 553 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 PNPLA1Q8N8W4 532 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 ZUFSPQ96AP4 578 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 SLC22A18Q96BI1 424 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 LINGO1Q96FE5 620 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 APOPT1Q96IL0 206 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 ELMO2Q96JJ3 720 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 LRFN5Q96NI6 719 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 MYOCQ99972 504 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 DDA1Q9BW61 102 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 FBXO8Q9NRD0 319 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 ACOT9Q9Y305 439 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 OTOGLQ3ZCN5 2332 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 PCM1Q15154 2024 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 E7ENX8 843 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 BTN3A1O00481 513 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 TERTO14746 1132 aaKnown RBP6.79□□□□□ -1.32
LIMA1-202ENST00000394943 TM9SF1O15321 606 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 GLRA3O75311 464 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 UBXN7O94888 489 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 INHBAP08476 426 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 CYC1P08574 325 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 CHRM5P08912 532 aaPredicted RBP6.79□□□□□ -1.32
LIMA1-202ENST00000394943 PREPP48147 710 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 PNLIPRP1P54315 467 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 ALDH18A1P54886 795 aaKnown RBP6.79□□□□□ -1.32
LIMA1-202ENST00000394943 TAP2Q03519 686 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 TRIP6Q15654 476 aaKnown RBP6.79□□□□□ -1.32
LIMA1-202ENST00000394943 RSPO4Q2I0M5 234 aaPredicted RBP6.79□□□□□ -1.32
LIMA1-202ENST00000394943 DEFB133Q30KQ1 61 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 DOK6Q6PKX4 331 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 TMPRSS9Q7Z410 1059 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 MYO1HQ8N1T3 1032 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 EID2Q8N6I1 236 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 L3MBTL4Q8NA19 623 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 OR2A1Q8NGT9 310 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 STAG3L4Q8TBR4 150 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 RHBGQ9H310 441 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 CAAP1Q9H8G2 361 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 C1GALT1Q9NS00 363 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 PLLPQ9Y342 182 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 IGKV1-8A0A0C4DH67 115 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 A0A1W2PQ72 361 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 TLCD2A6NGC4 264 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 IFRD1O00458 451 aaPredicted RBP6.79□□□□□ -1.32
LIMA1-202ENST00000394943 KLF11O14901 512 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 BIRC5O15392 142 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 CCNDBP1O95273 360 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 ASMTLO95671 621 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 RECKO95980 971 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 FGF5P12034 268 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 CYP2A7P20853 494 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms