RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 PACS1Q6VY07 963 aa6.86□□□□□ -1.31
VPS13A-201ENST00000355766 KYAT3Q6YP21 454 aaKnown RBP6.86□□□□□ -1.31
VPS13A-201ENST00000355766 SH2D5Q6ZV89 423 aa6.86□□□□□ -1.31
VPS13A-201ENST00000355766 ADIPOR2Q86V24 386 aa6.86□□□□□ -1.31
VPS13A-201ENST00000355766 IQCHQ86VS3 1027 aa6.86□□□□□ -1.31
VPS13A-201ENST00000355766 CIR1Q86X95 450 aaPredicted RBP6.86□□□□□ -1.31
VPS13A-201ENST00000355766 CFAP52Q8N1V2 620 aa6.86□□□□□ -1.31
VPS13A-201ENST00000355766 PGBD5Q8N414 524 aa6.86□□□□□ -1.31
VPS13A-201ENST00000355766 CARNMT1Q8N4J0 409 aa6.86□□□□□ -1.31
VPS13A-201ENST00000355766 PCDH20Q8N6Y1 951 aaKnown RBP6.86□□□□□ -1.31
VPS13A-201ENST00000355766 PPM1NQ8N819 430 aa6.86□□□□□ -1.31
VPS13A-201ENST00000355766 OR7D4Q8NG98 312 aa6.86□□□□□ -1.31
VPS13A-201ENST00000355766 GPR150Q8NGU9 434 aa6.86□□□□□ -1.31
VPS13A-201ENST00000355766 SPATA22Q8NHS9 363 aa6.86□□□□□ -1.31
VPS13A-201ENST00000355766 UHMK1Q8TAS1 419 aaKnown RBP6.86□□□□□ -1.31
VPS13A-201ENST00000355766 DTX3LQ8TDB6 740 aa6.86□□□□□ -1.31
VPS13A-201ENST00000355766 HCAR2Q8TDS4 363 aa6.86□□□□□ -1.31
VPS13A-201ENST00000355766 DENND1AQ8TEH3 1009 aa6.86□□□□□ -1.31
VPS13A-201ENST00000355766 EXTL1Q92935 676 aa6.86□□□□□ -1.31
VPS13A-201ENST00000355766 PRR11Q96HE9 360 aaPredicted RBP6.86□□□□□ -1.31
VPS13A-201ENST00000355766 SLC46A1Q96NT5 459 aa6.86□□□□□ -1.31
VPS13A-201ENST00000355766 LYSMD1Q96S90 227 aa6.86□□□□□ -1.31
VPS13A-201ENST00000355766 RBBP8Q99708 897 aa6.86□□□□□ -1.31
VPS13A-201ENST00000355766 SELENOSQ9BQE4 189 aa6.86□□□□□ -1.31
VPS13A-201ENST00000355766 CPEB1Q9BZB8 566 aaKnown RBP6.86□□□□□ -1.31
VPS13A-201ENST00000355766 VPS11Q9H270 941 aa6.86□□□□□ -1.31
VPS13A-201ENST00000355766 CTNNAL1Q9UBT7 734 aa6.86□□□□□ -1.31
VPS13A-201ENST00000355766 MID2Q9UJV3 735 aa6.86□□□□□ -1.31
VPS13A-201ENST00000355766 MAN2B2Q9Y2E5 1009 aa6.86□□□□□ -1.31
VPS13A-201ENST00000355766 DOPEY2Q9Y3R5 2298 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 TLN1Q9Y490 2541 aaKnown RBP6.85□□□□□ -1.31
VPS13A-201ENST00000355766 NUMA1Q14980 2115 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 NOTCH2Q04721 2471 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 SPTAN1Q13813 2472 aaKnown RBP6.85□□□□□ -1.31
VPS13A-201ENST00000355766 LY6G6EA0A0G2JKS1 128 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 PMS2P1A4D2B8 440 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 GMNCA6NCL1 334 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 C2orf81A6NN90 581 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 TRIM49D1C9J1S8 452 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 H7C0S8 307 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 MUSKO15146 869 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 PFDN6O15212 129 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 BIRC5O15392 142 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 FFAR2O15552 330 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 HTRA2O43464 458 aaPredicted RBP6.85□□□□□ -1.31
VPS13A-201ENST00000355766 RNASEH1O60930 286 aaKnown RBP6.85□□□□□ -1.31
VPS13A-201ENST00000355766 GLRA3O75311 464 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 CD160O95971 181 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 IGSF6O95976 241 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 ATP5BP06576 529 aaKnown RBP6.85□□□□□ -1.31
VPS13A-201ENST00000355766 SRPRAP08240 638 aaKnown RBP6.85□□□□□ -1.31
VPS13A-201ENST00000355766 ITGA2BP08514 1039 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 GIMD1P0DJR0 217 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 ALPPL2P10696 532 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 OGNP20774 298 aaKnown RBP6.85□□□□□ -1.31
VPS13A-201ENST00000355766 CD9P21926 228 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 DGKAP23743 735 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 CSKP41240 450 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 CCT5P48643 541 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 DUSP3P51452 185 aaPredicted RBP6.85□□□□□ -1.31
VPS13A-201ENST00000355766 SGSHP51688 502 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 NEK3P51956 506 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 KPNA2P52292 529 aaKnown RBP6.85□□□□□ -1.31
VPS13A-201ENST00000355766 ADARP55265 1226 aaKnown RBP6.85□□□□□ -1.31
VPS13A-201ENST00000355766 CORO7P57737 925 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 RHOAP61586 193 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 SNRPD1P62314 119 aaKnown RBP6.85□□□□□ -1.31
VPS13A-201ENST00000355766 GUCY1A3Q02108 690 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 ITKQ08881 620 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 EFTUD2Q15029 972 aaKnown RBP eCLIP6.85□□□□□ -1.31
VPS13A-201ENST00000355766 CYTH1Q15438 398 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 TAF1AQ15573 450 aaPredicted RBP6.85□□□□□ -1.31
VPS13A-201ENST00000355766 PDK4Q16654 411 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 HNRNPA1L2Q32P51 320 aaKnown RBP6.85□□□□□ -1.31
VPS13A-201ENST00000355766 PITRM1Q5JRX3 1037 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 AARS2Q5JTZ9 985 aaKnown RBP6.85□□□□□ -1.31
VPS13A-201ENST00000355766 SIRPB2Q5JXA9 342 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 CERCAMQ5T4B2 595 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 TSTD2Q5T7W7 516 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 TEDDM1Q5T9Z0 273 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 ZDHHC20Q5W0Z9 365 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 MRNIPQ6NTE8 343 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 AFTPHQ6ULP2 937 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 USP53Q70EK8 1073 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 NDUFAF2Q8N183 169 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 SLC25A45Q8N413 288 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 OR52K2Q8NGK3 314 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 MAPK15Q8TD08 544 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 STYXQ8WUJ0 223 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 GRAMD1AQ96CP6 724 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 SGF29Q96ES7 293 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 TSPAN17Q96FV3 270 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 CHMP6Q96FZ7 201 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 ATXN7L3BQ96GX2 97 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 MAGEB18Q96M61 343 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 ZNF641Q96N77 438 aaPredicted RBP6.85□□□□□ -1.31
VPS13A-201ENST00000355766 ZNF317Q96PQ6 595 aaPredicted RBP6.85□□□□□ -1.31
VPS13A-201ENST00000355766 GPR22Q99680 433 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 OMDQ99983 421 aa6.85□□□□□ -1.31
VPS13A-201ENST00000355766 IQCGQ9H095 443 aaKnown RBP6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms