RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 FAM98AQ8NCA5 519 aaKnown RBP14.59□□□□□ -0.07
COL17A1-201ENST00000353479 ZNF784Q8NCA9 323 aaPredicted RBP14.59□□□□□ -0.07
COL17A1-201ENST00000353479 GLB1L3Q8NCI6 653 aaPredicted RBP14.59□□□□□ -0.07
COL17A1-201ENST00000353479 KLHL25Q9H0H3 589 aa14.59□□□□□ -0.07
COL17A1-201ENST00000353479 SERHL2Q9H4I8 314 aa14.59□□□□□ -0.07
COL17A1-201ENST00000353479 SERHLQ9NQF3 203 aa14.59□□□□□ -0.07
COL17A1-201ENST00000353479 LIN7AO14910 233 aaPredicted RBP14.58□□□□□ -0.07
COL17A1-201ENST00000353479 FABP3P05413 133 aa14.58□□□□□ -0.07
COL17A1-201ENST00000353479 MASP1P48740 699 aa14.58□□□□□ -0.07
COL17A1-201ENST00000353479 RUNX3Q13761 415 aa14.58□□□□□ -0.07
COL17A1-201ENST00000353479 LPCAT4Q643R3 524 aa14.58□□□□□ -0.07
COL17A1-201ENST00000353479 TCEAL8Q8IYN2 117 aa14.58□□□□□ -0.07
COL17A1-201ENST00000353479 ROPN1LQ96C74 230 aa14.58□□□□□ -0.07
COL17A1-201ENST00000353479 RETREG1Q9H6L5 497 aa14.58□□□□□ -0.07
COL17A1-201ENST00000353479 SAGE1Q9NXZ1 904 aa14.58□□□□□ -0.07
COL17A1-201ENST00000353479 PDP1Q9P0J1 537 aaPredicted RBP14.58□□□□□ -0.07
COL17A1-201ENST00000353479 PGAP2Q9UHJ9 254 aa14.58□□□□□ -0.07
COL17A1-201ENST00000353479 SHOX2O60902 331 aaPredicted RBP14.58□□□□□ -0.08
COL17A1-201ENST00000353479 ADSLP30566 484 aaPredicted RBP14.58□□□□□ -0.08
COL17A1-201ENST00000353479 GRIA2P42262 883 aa14.58□□□□□ -0.08
COL17A1-201ENST00000353479 ZNF252P-AS1Q0IIN9 211 aa14.58□□□□□ -0.08
COL17A1-201ENST00000353479 ZBTB6Q15916 424 aa14.58□□□□□ -0.08
COL17A1-201ENST00000353479 ARMCX4Q5H9R4 360 aa14.58□□□□□ -0.08
COL17A1-201ENST00000353479 ZNF648Q5T619 568 aaPredicted RBP14.58□□□□□ -0.08
COL17A1-201ENST00000353479 FRG2Q64ET8 278 aa14.58□□□□□ -0.08
COL17A1-201ENST00000353479 GOLGA7Q7Z5G4 137 aa14.58□□□□□ -0.08
COL17A1-201ENST00000353479 GALNT5Q7Z7M9 940 aa14.58□□□□□ -0.08
COL17A1-201ENST00000353479 NPWQ8N729 165 aa14.58□□□□□ -0.08
COL17A1-201ENST00000353479 ZBED6CLQ96FA7 236 aaPredicted RBP14.58□□□□□ -0.08
COL17A1-201ENST00000353479 FRG2BQ96QU4 278 aa14.58□□□□□ -0.08
COL17A1-201ENST00000353479 S100A14Q9HCY8 104 aa14.58□□□□□ -0.08
COL17A1-201ENST00000353479 COPS7AQ9UBW8 275 aa14.58□□□□□ -0.08
COL17A1-201ENST00000353479 ERI3O43414 337 aaKnown RBP14.58□□□□□ -0.08
COL17A1-201ENST00000353479 EDIL3O43854 480 aa14.58□□□□□ -0.08
COL17A1-201ENST00000353479 NCBP2P52298 156 aaKnown RBP eCLIP14.58□□□□□ -0.08
COL17A1-201ENST00000353479 CASP9P55211 416 aa14.58□□□□□ -0.08
COL17A1-201ENST00000353479 PTCHD3Q3KNS1 767 aa14.58□□□□□ -0.08
COL17A1-201ENST00000353479 SMYD1Q8NB12 490 aa14.58□□□□□ -0.08
COL17A1-201ENST00000353479 KCT2Q8NC54 265 aa14.58□□□□□ -0.08
COL17A1-201ENST00000353479 FAM156AQ8NDB6 213 aa14.58□□□□□ -0.08
COL17A1-201ENST00000353479 OR52J3Q8NH60 311 aa14.58□□□□□ -0.08
COL17A1-201ENST00000353479 HHIPL1Q96JK4 782 aa14.58□□□□□ -0.08
COL17A1-201ENST00000353479 SLC35G5Q96KT7 338 aa14.58□□□□□ -0.08
COL17A1-201ENST00000353479 NSUN3Q9H649 340 aaKnown RBP14.58□□□□□ -0.08
COL17A1-201ENST00000353479 HCSTQ9UBK5 93 aa14.58□□□□□ -0.08
COL17A1-201ENST00000353479 A8MU76 341 aa14.58□□□□□ -0.08
COL17A1-201ENST00000353479 LOC730098B7Z3J9 87 aa14.58□□□□□ -0.08
COL17A1-201ENST00000353479 LATS1O95835 1130 aa14.58□□□□□ -0.08
COL17A1-201ENST00000353479 CD70P32970 193 aa14.58□□□□□ -0.08
COL17A1-201ENST00000353479 ARCN1P48444 511 aaKnown RBP14.58□□□□□ -0.08
COL17A1-201ENST00000353479 MTPNP58546 118 aa14.58□□□□□ -0.08
COL17A1-201ENST00000353479 NRAPQ86VF7 1730 aa14.58□□□□□ -0.08
COL17A1-201ENST00000353479 KLHDC7BQ96G42 594 aa14.58□□□□□ -0.08
COL17A1-201ENST00000353479 FCRL3Q96P31 734 aaPredicted RBP14.58□□□□□ -0.08
COL17A1-201ENST00000353479 LCHNA4D1U4 455 aa14.57□□□□□ -0.08
COL17A1-201ENST00000353479 IFNW1P05000 195 aa14.57□□□□□ -0.08
COL17A1-201ENST00000353479 SAGP10523 405 aaPredicted RBP14.57□□□□□ -0.08
COL17A1-201ENST00000353479 ARRB1P49407 418 aaPredicted RBP14.57□□□□□ -0.08
COL17A1-201ENST00000353479 RPS27LQ71UM5 84 aaKnown RBP14.57□□□□□ -0.08
COL17A1-201ENST00000353479 ATP6V1C2Q8NEY4 427 aa14.57□□□□□ -0.08
COL17A1-201ENST00000353479 MYDGFQ969H8 173 aa14.57□□□□□ -0.08
COL17A1-201ENST00000353479 PMEPA1Q969W9 287 aa14.57□□□□□ -0.08
COL17A1-201ENST00000353479 WDR6Q9NNW5 1121 aaKnown RBP14.57□□□□□ -0.08
COL17A1-201ENST00000353479 HCFC1R1Q9NWW0 138 aa14.57□□□□□ -0.08
COL17A1-201ENST00000353479 SMIM31A0A1B0GVY4 71 aa14.57□□□□□ -0.08
COL17A1-201ENST00000353479 EFCAB10A6NFE3 127 aa14.57□□□□□ -0.08
COL17A1-201ENST00000353479 TRIM24O15164 1050 aa14.57□□□□□ -0.08
COL17A1-201ENST00000353479 TP73O15350 636 aa14.57□□□□□ -0.08
COL17A1-201ENST00000353479 ITGBL1O95965 494 aaPredicted RBP14.57□□□□□ -0.08
COL17A1-201ENST00000353479 YAP1P46937 504 aaKnown RBP14.57□□□□□ -0.08
COL17A1-201ENST00000353479 RFX4Q33E94 735 aa14.57□□□□□ -0.08
COL17A1-201ENST00000353479 AGTRAPQ6RW13 159 aa14.57□□□□□ -0.08
COL17A1-201ENST00000353479 PTCHD4Q6ZW05 846 aa14.57□□□□□ -0.08
COL17A1-201ENST00000353479 NEK10Q6ZWH5 1172 aa14.57□□□□□ -0.08
COL17A1-201ENST00000353479 ABHD13Q7L211 337 aa14.57□□□□□ -0.08
COL17A1-201ENST00000353479 SCD5Q86SK9 330 aa14.57□□□□□ -0.08
COL17A1-201ENST00000353479 OR4F6Q8NGB9 312 aa14.57□□□□□ -0.08
COL17A1-201ENST00000353479 OSBPL11Q9BXB4 747 aa14.57□□□□□ -0.08
COL17A1-201ENST00000353479 ZNF395Q9H8N7 513 aaPredicted RBP14.57□□□□□ -0.08
COL17A1-201ENST00000353479 AKTIPQ9H8T0 292 aa14.57□□□□□ -0.08
COL17A1-201ENST00000353479 CA14Q9ULX7 337 aa14.57□□□□□ -0.08
COL17A1-201ENST00000353479 FAM234BA2RU67 622 aa14.57□□□□□ -0.08
COL17A1-201ENST00000353479 FOLH1Q04609 750 aa14.57□□□□□ -0.08
COL17A1-201ENST00000353479 PPP1R14AQ96A00 147 aa14.57□□□□□ -0.08
COL17A1-201ENST00000353479 RGMAQ96B86 450 aa14.57□□□□□ -0.08
COL17A1-201ENST00000353479 CIB1Q99828 191 aa14.57□□□□□ -0.08
COL17A1-201ENST00000353479 ADAM7Q9H2U9 754 aa14.57□□□□□ -0.08
COL17A1-201ENST00000353479 ZDHHC2Q9UIJ5 367 aa14.57□□□□□ -0.08
COL17A1-201ENST00000353479 AP4B1Q9Y6B7 739 aa14.57□□□□□ -0.08
COL17A1-201ENST00000353479 TOGARAM1Q9Y4F4 1720 aa14.57□□□□□ -0.08
COL17A1-201ENST00000353479 FAM149AA5PLN7 773 aa14.57□□□□□ -0.08
COL17A1-201ENST00000353479 NELFEP18615 380 aaKnown RBP14.57□□□□□ -0.08
COL17A1-201ENST00000353479 BROXQ5VW32 411 aa14.57□□□□□ -0.08
COL17A1-201ENST00000353479 TNFAIP8L2Q6P589 184 aaPredicted RBP14.57□□□□□ -0.08
COL17A1-201ENST00000353479 C1orf52Q8N6N3 182 aaKnown RBP14.57□□□□□ -0.08
COL17A1-201ENST00000353479 TSPAN14Q8NG11 270 aa14.57□□□□□ -0.08
COL17A1-201ENST00000353479 C5orf34Q96MH7 638 aa14.57□□□□□ -0.08
COL17A1-201ENST00000353479 HDHD2Q9H0R4 259 aa14.57□□□□□ -0.08
COL17A1-201ENST00000353479 MUC13Q9H3R2 512 aa14.57□□□□□ -0.08
COL17A1-201ENST00000353479 SLC2A4RGQ9NR83 387 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms