RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 SSTR1P30872 391 aa17.35■□□□□ 0.37
CLN3-247ENST00000636351 CYP4F2P78329 520 aa17.35■□□□□ 0.37
CLN3-247ENST00000636351 FRG1Q14331 258 aaKnown RBP17.35■□□□□ 0.37
CLN3-247ENST00000636351 TEDDM1Q5T9Z0 273 aa17.35■□□□□ 0.37
CLN3-247ENST00000636351 CNSTQ6PJW8 725 aa17.35■□□□□ 0.37
CLN3-247ENST00000636351 KIAA0408Q6ZU52 694 aa17.35■□□□□ 0.37
CLN3-247ENST00000636351 TMEM26Q6ZUK4 368 aa17.35■□□□□ 0.37
CLN3-247ENST00000636351 DTX1Q86Y01 620 aa17.35■□□□□ 0.37
CLN3-247ENST00000636351 CNTN4Q8IWV2 1026 aa17.35■□□□□ 0.37
CLN3-247ENST00000636351 RBM12BQ8IXT5 1001 aaKnown RBP17.35■□□□□ 0.37
CLN3-247ENST00000636351 IFT20Q8IY31 132 aa17.35■□□□□ 0.37
CLN3-247ENST00000636351 ZSCAN1Q8NBB4 408 aa17.35■□□□□ 0.37
CLN3-247ENST00000636351 RCBTB1Q8NDN9 531 aa17.35■□□□□ 0.37
CLN3-247ENST00000636351 ASZ1Q8WWH4 475 aa17.35■□□□□ 0.37
CLN3-247ENST00000636351 INSM2Q96T92 566 aaPredicted RBP17.35■□□□□ 0.37
CLN3-247ENST00000636351 NUDT22Q9BRQ3 303 aa17.35■□□□□ 0.37
CLN3-247ENST00000636351 TBC1D10AQ9BXI6 508 aa17.35■□□□□ 0.37
CLN3-247ENST00000636351 STARD5Q9NSY2 213 aa17.35■□□□□ 0.37
CLN3-247ENST00000636351 AKAP7Q9P0M2 348 aaPredicted RBP17.35■□□□□ 0.37
CLN3-247ENST00000636351 TSR3Q9UJK0 312 aaKnown RBP17.35■□□□□ 0.37
CLN3-247ENST00000636351 MAST4O15021 2626 aa17.35■□□□□ 0.37
CLN3-247ENST00000636351 SLC5A10A0PJK1 596 aa17.34■□□□□ 0.37
CLN3-247ENST00000636351 BHMG1C9JSJ3 638 aaPredicted RBP17.34■□□□□ 0.37
CLN3-247ENST00000636351 KPNA5O15131 536 aa17.34■□□□□ 0.37
CLN3-247ENST00000636351 HAUS5O94927 633 aa17.34■□□□□ 0.37
CLN3-247ENST00000636351 CD151P48509 253 aa17.34■□□□□ 0.37
CLN3-247ENST00000636351 GPLD1P80108 840 aa17.34■□□□□ 0.37
CLN3-247ENST00000636351 CBLBQ13191 982 aa17.34■□□□□ 0.37
CLN3-247ENST00000636351 CUL1Q13616 776 aa17.34■□□□□ 0.37
CLN3-247ENST00000636351 GPR18Q14330 331 aa17.34■□□□□ 0.37
CLN3-247ENST00000636351 TBR1Q16650 682 aa17.34■□□□□ 0.37
CLN3-247ENST00000636351 TMEM164Q5U3C3 297 aa17.34■□□□□ 0.37
CLN3-247ENST00000636351 NKAIN2Q5VXU1 208 aa17.34■□□□□ 0.37
CLN3-247ENST00000636351 CAPRIN2Q6IMN6 1127 aaKnown RBP17.34■□□□□ 0.37
CLN3-247ENST00000636351 UNC13CQ8NB66 2214 aa17.34■□□□□ 0.37
CLN3-247ENST00000636351 JPH3Q8WXH2 748 aaPredicted RBP17.34■□□□□ 0.37
CLN3-247ENST00000636351 CDKL2Q92772 493 aa17.34■□□□□ 0.37
CLN3-247ENST00000636351 FERD3LQ96RJ6 166 aa17.34■□□□□ 0.37
CLN3-247ENST00000636351 NDNQ99608 321 aa17.34■□□□□ 0.37
CLN3-247ENST00000636351 HGH1Q9BTY7 390 aa17.34■□□□□ 0.37
CLN3-247ENST00000636351 SLC40A1Q9NP59 571 aa17.34■□□□□ 0.37
CLN3-247ENST00000636351 ASF1AQ9Y294 204 aa17.34■□□□□ 0.37
CLN3-247ENST00000636351 COMMD10Q9Y6G5 202 aa17.34■□□□□ 0.37
CLN3-247ENST00000636351 COLEC10Q9Y6Z7 277 aa17.34■□□□□ 0.37
CLN3-247ENST00000636351 IGHV1OR21-1A0A087WYE8 117 aa17.33■□□□□ 0.36
CLN3-247ENST00000636351 IGHV5-10-1A0A0J9YXX1 117 aa17.33■□□□□ 0.36
CLN3-247ENST00000636351 GSTA2P09210 222 aa17.33■□□□□ 0.36
CLN3-247ENST00000636351 AMD1P17707 334 aa17.33■□□□□ 0.36
CLN3-247ENST00000636351 NDUFS1P28331 727 aa17.33■□□□□ 0.36
CLN3-247ENST00000636351 LEPRP48357 1165 aaKnown RBP17.33■□□□□ 0.36
CLN3-247ENST00000636351 CSRP3P50461 194 aa17.33■□□□□ 0.36
CLN3-247ENST00000636351 EPHA4P54764 986 aa17.33■□□□□ 0.36
CLN3-247ENST00000636351 TTLL9Q3SXZ7 439 aa17.33■□□□□ 0.36
CLN3-247ENST00000636351 ZNF574Q6ZN55 896 aaPredicted RBP17.33■□□□□ 0.36
CLN3-247ENST00000636351 C3orf62Q6ZUJ4 267 aa17.33■□□□□ 0.36
CLN3-247ENST00000636351 ZBTB2Q8N680 514 aa17.33■□□□□ 0.36
CLN3-247ENST00000636351 GPATCH11Q8N954 259 aa17.33■□□□□ 0.36
CLN3-247ENST00000636351 TFGQ92734 400 aaPredicted RBP17.33■□□□□ 0.36
CLN3-247ENST00000636351 PMEPA1Q969W9 287 aa17.33■□□□□ 0.36
CLN3-247ENST00000636351 CCDC74BQ96LY2 380 aa17.33■□□□□ 0.36
CLN3-247ENST00000636351 AARSD1Q9BTE6 412 aaKnown RBP17.33■□□□□ 0.36
CLN3-247ENST00000636351 TSPYL1Q9H0U9 437 aa17.33■□□□□ 0.36
CLN3-247ENST00000636351 UCK1Q9HA47 277 aa17.33■□□□□ 0.36
CLN3-247ENST00000636351 NSMCE4AQ9NXX6 385 aa17.33■□□□□ 0.36
CLN3-247ENST00000636351 TXNDC16Q9P2K2 825 aa17.33■□□□□ 0.36
CLN3-247ENST00000636351 BOD1L1Q8NFC6 3051 aa17.32■□□□□ 0.36
CLN3-247ENST00000636351 TCRBV9S1A1TA0A576 114 aa17.32■□□□□ 0.36
CLN3-247ENST00000636351 IQCJ-SCHIP1C9J366 451 aaPredicted RBP17.32■□□□□ 0.36
CLN3-247ENST00000636351 VPS26AO75436 327 aa17.32■□□□□ 0.36
CLN3-247ENST00000636351 TYRP1P17643 537 aa17.32■□□□□ 0.36
CLN3-247ENST00000636351 CD1CP29017 333 aa17.32■□□□□ 0.36
CLN3-247ENST00000636351 STX2P32856 288 aa17.32■□□□□ 0.36
CLN3-247ENST00000636351 PLEKHS1Q5SXH7 462 aa17.32■□□□□ 0.36
CLN3-247ENST00000636351 ZNF549Q6P9A3 640 aa17.32■□□□□ 0.36
CLN3-247ENST00000636351 STRA8Q7Z7C7 330 aa17.32■□□□□ 0.36
CLN3-247ENST00000636351 VRK3Q8IV63 474 aa17.32■□□□□ 0.36
CLN3-247ENST00000636351 CTAGE3PQ8IX95 158 aa17.32■□□□□ 0.36
CLN3-247ENST00000636351 SLC22A15Q8IZD6 547 aa17.32■□□□□ 0.36
CLN3-247ENST00000636351 PHC3Q8NDX5 983 aa17.32■□□□□ 0.36
CLN3-247ENST00000636351 CFAP61Q8NHU2 1237 aa17.32■□□□□ 0.36
CLN3-247ENST00000636351 NCSTNQ92542 709 aa17.32■□□□□ 0.36
CLN3-247ENST00000636351 KCNJ9Q92806 393 aa17.32■□□□□ 0.36
CLN3-247ENST00000636351 B3GNT4Q9C0J1 378 aa17.32■□□□□ 0.36
CLN3-247ENST00000636351 TRIT1Q9H3H1 467 aaKnown RBP17.32■□□□□ 0.36
CLN3-247ENST00000636351 EPB41L1Q9H4G0 881 aa17.32■□□□□ 0.36
CLN3-247ENST00000636351 MOCS1Q9NZB8 636 aa17.32■□□□□ 0.36
CLN3-247ENST00000636351 IL17BQ9UHF5 180 aa17.32■□□□□ 0.36
CLN3-247ENST00000636351 NFU1Q9UMS0 254 aa17.32■□□□□ 0.36
CLN3-247ENST00000636351 STMND1H3BQB6 276 aa17.31■□□□□ 0.36
CLN3-247ENST00000636351 TERTO14746 1132 aaKnown RBP17.31■□□□□ 0.36
CLN3-247ENST00000636351 HGSO14964 777 aaPredicted RBP17.31■□□□□ 0.36
CLN3-247ENST00000636351 GPC4O75487 556 aa17.31■□□□□ 0.36
CLN3-247ENST00000636351 SPAG6O75602 509 aa17.31■□□□□ 0.36
CLN3-247ENST00000636351 PIAS1O75925 651 aa17.31■□□□□ 0.36
CLN3-247ENST00000636351 UBXN7O94888 489 aa17.31■□□□□ 0.36
CLN3-247ENST00000636351 AHSGP02765 367 aa17.31■□□□□ 0.36
CLN3-247ENST00000636351 FGF3P11487 239 aaPredicted RBP17.31■□□□□ 0.36
CLN3-247ENST00000636351 CSF2RBP32927 897 aa17.31■□□□□ 0.36
CLN3-247ENST00000636351 GPX6P59796 221 aa17.31■□□□□ 0.36
CLN3-247ENST00000636351 PRKG2Q13237 762 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms